CX308789

Overview
NameCX308789
Unique NameCX308789
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4247 contig Ccv1_Contig4247:373..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: APRR7_ARATH (Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.845e-18
Identity = 57/174 (32.76%), Postives = 90/174 (51.72%), Query Frame = -2
Query:  160 LRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGF----KLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSG-----------SLEETDHHKRGSDEIEYASSVNEGTEGT 636
            +RVL+V++D     I+  +LR C Y V   S    A  +L +     D+VL++V MP + G     K+L H     ++PVIMMS+   +  V + +  GA D+L+KPIR+ ELK +WQHV R+  + +     SG           S++++D     SDE E  S     ++G+
Sbjct:   78 IRVLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYLSGIGLLCKILNHKS-RRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHVWRRCQSSSGSGSESGTHQTQKSVKSKSIKKSDQDSGSSDENENGSIGLNASDGS 250          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: PRR1_ORYSJ (Two-component response regulator-like PRR1 OS=Oryza sativa subsp. japonica GN=PRR1 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.140e-17
Identity = 46/123 (37.40%), Postives = 73/123 (59.35%), Query Frame = -2
Query:  277 LRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL---PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 636
            +R+L+ D D +  R + ++L  C Y VT        +N+L    G  D++L++V +P    FK+L++I    +L   P+IMMS    VS V++ +R GA +YL+KP+R  EL N+W HV R+R
Sbjct:   28 VRILLCDSDPSSSREVLRLLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILAEVDLPVSKCFKMLKYIARNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHVWRRR 150          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: APRR1_ARATH (Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.559e-16
Identity = 58/185 (31.35%), Postives = 90/185 (48.65%), Query Frame = -2
Query:   91 LRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL---PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGELESDDP 636
            +R+L+ D+D T    +  +L  C Y VT    A   ++ L       D++L+++ +P   G K+L +I  + DL   PVIMMS    V  V++ ++ GA DYL+KP+R  EL N+W H+ R+R       +N  S    D    GSD+    S  N  +   F        + + DD  L S +P
Sbjct:   19 VRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPDIDIILAEIDLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNMLSY---DFDLVGSDQ----SDPNTNSTNLF--------SDDTDDRSLRSTNP 188          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: ARR21_ARATH (Putative two-component response regulator ARR21 OS=Arabidopsis thaliana GN=ARR21 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.036e-16
Identity = 60/237 (25.32%), Postives = 108/237 (45.57%), Query Frame = -2
Query:    1 LRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETD------------------------HHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGIDKA 636
            + V+VVDDD     I+ +ML+   Y V        AL+ L+ ++   D++++D +MP M+G +L + I  E  +LPV++MS+D   +     +  GA  ++ KPI   +L  I+Q  +  + N         + ++ D                          K  S  +   +     T+G+ K ++++ +    DDGE  S      KK ++ W+  LH  F+ A+  +G+DKA
Sbjct:   16 INVMVVDDDHVFLDIMSRMLQHSKYRVIAVDDPKKALSTLKIQRDNIDLIITDYYMPGMNGLQLKKQITQEFGNLPVLVMSSD--TNKEEESLSCGAMGFIPKPIHPTDLTKIYQFALSNKRNGKSTLSTEQNHKDADVSVPQQITLVPEQADVLKTKRKNCSFKSDSRTVNSTNGSCVSTDGSRKNRKRKPNGGPSDDGESMS---QPAKKKKIQWTDSLHDLFLQAIRHIGLDKA 247          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: PDE2_DICDI (3',5'-cyclic-nucleotide phosphodiesterase regA OS=Dictyostelium discoideum GN=regA PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.117e-14
Identity = 59/187 (31.55%), Postives = 93/187 (49.73%), Query Frame = -2
Query:  100 PAGLRVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIG---LEMDLPVIMMSADG-RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSL-EETDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEEDDGELES 645
            P+ +R+LV DDD    +IL  +L++  YNVT      +A   + + +  +D+VL+DV MP + GF LL+ I    +   +PVI+MS            I+ G  D+L KPI +E LK     V++  W   KE E   +L +E +   + + E+E     +E  E T K  +    +KE  +  L S
Sbjct:  157 PSKVRILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYINKGQQKYDLVLTDVMMPHITGFDLLQRINDHPVHRHIPVILMSGTAVDYKYANDTIKIGGQDFLTKPIAKELLKKKIDTVLQSIWQRRKEEEYKATLAQEREKGNKLAKEMELKE--HEIEELTKKVSKMSSISKEAMESPLVS 341          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: YCF27_GUITH (Probable transcriptional regulator ycf27 OS=Guillardia theta GN=ycf27 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.459e-14
Identity = 43/118 (36.44%), Postives = 72/118 (61.02%), Query Frame = -2
Query:  280 RVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 633
            +VL+VDD+ ++ +ILE  L    Y V T S    ALN+  +     DVV+ D+ MP +DG+ + + I  + D+P+IM++A G V+  + G+  GA DY++KP   +EL+   + V+R+
Sbjct:   16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMP--DVVILDIMMPKLDGYGVCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRR 131          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: ZRAR_ECO57 (Transcriptional regulatory protein zraR OS=Escherichia coli O157:H7 GN=zraR PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.240e-14
Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = -2
Query:  307 VLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK 630
            +LVVDDDI+   IL+ +LR   YNV   +    AL  +RER   FD+VL DV M +MDG   L+ I  L   +PV++M+A   V   +  ++ GA DYLIKP+  + L+
Sbjct:    8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRER--VFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQ 114          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: YCF27_CYAPA (Probable transcriptional regulator ycf27 OS=Cyanophora paradoxa GN=ycf27 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.240e-14
Identity = 43/121 (35.54%), Postives = 73/121 (60.33%), Query Frame = -2
Query:  271 RVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 633
            ++LVVDD+I++ RILE  L    Y V T +    AL I +      ++V+ DV MP +DG+ + + +  E D+P+IM++A G V+  + G+  GA DY++KP   +EL+   + ++R+  N
Sbjct:    7 KILVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLEHP--NLVVLDVMMPKLDGYGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRRTEN 125          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: YCF27_PORPU (Probable transcriptional regulator ycf27 OS=Porphyra purpurea GN=ycf27 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.235e-13
Identity = 44/118 (37.29%), Postives = 70/118 (59.32%), Query Frame = -2
Query:  280 RVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 633
            ++LVVDD+ ++ RILE  L    Y V T S    AL I R+      +V+ DV MP +DG+ + + +  E D+P+IM++A G V   + G+  GA DY++KP   +EL+   + V+R+
Sbjct:    7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYP--SLVVLDVMMPKLDGYGVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: YCF27_PORYE (Probable transcriptional regulator ycf27 OS=Porphyra yezoensis GN=ycf27 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.613e-13
Identity = 43/118 (36.44%), Postives = 70/118 (59.32%), Query Frame = -2
Query:  280 RVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 633
            ++LVVDD+ ++ RILE  L    Y V T S    AL + R+      +V+ DV MP +DG+ + + +  E D+P+IM++A G V   + G+  GA DY++KP   +EL+   + V+R+
Sbjct:    7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALLVFRKEYP--SLVVLDVMMPKLDGYGVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122          
The following BLAST results are available for this feature:
BLAST of CX308789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
APRR7_ARATH4.845e-1832.76Two-component response regulator-like APRR7 OS=Ara... [more]
PRR1_ORYSJ3.140e-1737.40Two-component response regulator-like PRR1 OS=Oryz... [more]
APRR1_ARATH1.559e-1631.35Two-component response regulator-like APRR1 OS=Ara... [more]
ARR21_ARATH2.036e-1625.32Putative two-component response regulator ARR21 OS... [more]
PDE2_DICDI1.117e-1431.553',5'-cyclic-nucleotide phosphodiesterase regA OS=... [more]
YCF27_GUITH1.459e-1436.44Probable transcriptional regulator ycf27 OS=Guilla... [more]
ZRAR_ECO577.240e-1442.20Transcriptional regulatory protein zraR OS=Escheri... [more]
YCF27_CYAPA7.240e-1435.54Probable transcriptional regulator ycf27 OS=Cyanop... [more]
YCF27_PORPU1.235e-1337.29Probable transcriptional regulator ycf27 OS=Porphy... [more]
YCF27_PORYE1.613e-1336.44Probable transcriptional regulator ycf27 OS=Porphy... [more]

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Properties
Property NameValue
Genbank descriptionC21003G12Rv AbsLeaSub1 Citrus clementina cDNA clone C21003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308789 ID=CX308789; Name=CX308789; organism=Citrus clementina; type=EST; length=655bp
AGCCTTATCAATCCCAAGCTGATTTACAGCACTGACAAATTGCTGATGTA
GCTCTACTGACCACACTACACGTGGTTTCTTTGTCGTGGAAGGATCATCG
CTTTCCAGTTCACCATCATCTTCTTCTTTAGCACTAATCCTCTTTCTCTG
AGCTTTAAATGTTCCTTCTGTTCCTTCGTTAACAGAAGAAGCATATTCAA
TTTCATCACTTCCTCTTTTATGATGATCAGTTTCTTCCAAGCTGCCAGAA
TTTTCATGTTCTTTATTTTCATTCCACCTTTTCCGAACAACATGCTGCCA
TATATTCTTAAGCTCCTCTTCACGTATAGGCTTAATCAAGTAATCACAAG
CTCCATGTCTAATTCCCCTCATAACAGCAGATACCCTTCCATCAGCTGAC
ATCATGATAACAGGAAGATCCATTTCAAGTCCAATATGTTCAAGAAGTTT
GAAGCCATCCATATCAGGCATGTGAACGTCACTTAACACCACATCAAAAC
AGCCCTTCCTCTCCCGTAGAATATTCAAAGCAACAGCTGCCTGGGAGCAT
GTAGTTACGTTGTAGAGGCATCGACGAAGCATCTGCTCGAGAATTCGCAN
GACAGTAATGTCATCGTCAACAACAAGAACCCTTAGTCCAGCAGGAAACT
GATCA
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