CX308789

Overview
NameCX308789
Unique NameCX308789
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4247 contig Ccv1_Contig4247:373..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: ZRAR_ECOLI (Transcriptional regulatory protein zraR OS=Escherichia coli (strain K12) GN=zraR PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.107e-13
Identity = 45/109 (41.28%), Postives = 65/109 (59.63%), Query Frame = -2
Query:  307 VLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK 630
            +LVVDDDI+   IL+ +LR   YNV   +    AL  +RE+   FD+VL DV M +MDG   L+ I  L   +PV++M+A   V   +  ++ GA DYLIKP+  + L+
Sbjct:    8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ--VFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQ 114          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: CITT_BACHD (Transcriptional regulatory protein citT OS=Bacillus halodurans GN=citT PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.751e-13
Identity = 43/122 (35.25%), Postives = 71/122 (58.20%), Query Frame = -2
Query:  277 RVLVVDDDITVXRILEQMLRRCLYN--VTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 633
            +VL+++DD  V +I EQM+    Y   ++TC     AL+ L E+    D++L DV++PD+ G +LL  I  +  D+ ++M++A   V  V   +R G  DYL+KP+++E L       V+KR
Sbjct:    6 KVLIIEDDFRVAQIQEQMVNDHPYFHVISTCRTGGEALDYLSEKAAALDLILLDVYIPDVKGLELLWAIREKFRDVDIMMVTAAKEVDTVQEALRGGIIDYLLKPVQKEVLHQRLDAYVQKR 127          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: YCF27_PORAE (Probable transcriptional regulator ycf27 OS=Porphyridium aerugineum GN=ycf27 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.693e-13
Identity = 43/132 (32.58%), Postives = 78/132 (59.09%), Query Frame = -2
Query:  244 RVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK--RWNENKEHENSG 633
            ++LV+DD+ ++ RILE  L    Y+V + +    AL+I +      ++V+ D+ MP +DG+ + + +  E D+P+IM++A   VS  + G+  GA DY++KP   +EL+   + V+R+  + + N    NSG
Sbjct:    5 KILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFKREHP--NLVVLDLMMPKLDGYGVCQELRKESDVPIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRRVDKASSNNNLPNSG 134          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: ZRAR_KLEOX (Transcriptional regulatory protein zraR OS=Klebsiella oxytoca GN=zraR PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.045e-12
Identity = 42/109 (38.53%), Postives = 65/109 (59.63%), Query Frame = -2
Query:  307 VLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK 630
            +LVVDDDI+   IL+ +LR   Y V   +    AL  +RE+   FD+VL D+ M +MDG + L+ I      +PV++M+A   V   +  ++ GA DYLIKP+  ++L+
Sbjct:    8 ILVVDDDISHCTILQALLRGWGYRVALANNGLQALEKVREK--VFDLVLCDIRMAEMDGIETLKEIKTFNPSIPVLIMTAYSSVDTAVEALKSGALDYLIKPLDFDKLQ 114          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: ZRAR_SALTY (Transcriptional regulatory protein zraR OS=Salmonella typhimurium GN=zraR PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = -2
Query:  307 VLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK 630
            +LVVDDD++   IL+ +LR   YNV        AL  +RE+   FD+VL DV M +MDG   L+ I  L   +P+++M+A   V   +  ++ GA DYLIKP+  + L+
Sbjct:    8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREK--VFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQ 114          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: ZRAR_SALTI (Transcriptional regulatory protein zraR OS=Salmonella typhi GN=zraR PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = -2
Query:  307 VLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK 630
            +LVVDDD++   IL+ +LR   YNV        AL  +RE+   FD+VL DV M +MDG   L+ I  L   +P+++M+A   V   +  ++ GA DYLIKP+  + L+
Sbjct:    8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREK--VFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQ 114          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: YCF27_CYACA (Probable transcriptional regulator ycf27 OS=Cyanidium caldarium GN=ycf27 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.973e-12
Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = -2
Query:  265 VLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNEN 630
            +L+VDD+  + +IL+  L    Y+V+T      AL I        D+++ DV MP +DG+ + + I  E D+P+IM++A   V   + G+  GA DY+IKP    EL+   Q ++R+    N
Sbjct:   14 LLIVDDENNIRKILQTRLTLLGYSVSTACNGEEALKIFTTHS--IDLIILDVMMPKLDGYGVCQEIRKESDIPIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELEARIQSILRRIQTRN 133          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: APRR2_ARATH (Two-component response regulator-like APRR2 OS=Arabidopsis thaliana GN=APRR2 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.973e-12
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = -2
Query:  268 DQFPAGLRVLVV------DDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNE 654
            + FP GL+VL++      D D +        L    Y VTT +    AL+ + +    F + + +V+M  + + FK LE    +  LP IM+S D  ++  M+ I  GA ++L KP+  E+LKNIWQHVV K +N+
Sbjct:   12 ENFPKGLKVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEALSAVVKNPESFHIAIVEVNMSAESESFKFLE--AAKDVLPTIMISTDHCITTTMKCIALGAVEFLQKPLSPEKLKNIWQHVVHKAFND 145          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: NTRC_AZOC5 (Nitrogen assimilation regulatory protein ntrC OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=ntrC PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.776e-12
Identity = 44/111 (39.64%), Postives = 59/111 (53.15%), Query Frame = -2
Query:  301 VLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 630
            +LV DDD  +  +L Q L R  Y V +C  AA     + +  G  D+V++DV MPD + F LL  I     DLPVI+MSA       +R    GA +YL KP   +EL +I
Sbjct:    6 ILVADDDAAIRTVLNQALSRAGYEVRSCGNAATLWRWVSQGDG--DLVITDVVMPDENAFDLLPRIKKARPDLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELISI 114          
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: YCF27_GALSU (Probable transcriptional regulator ycf27 OS=Galdieria sulphuraria GN=ycf27 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 40/118 (33.90%), Postives = 69/118 (58.47%), Query Frame = -2
Query:  280 RVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 633
            ++L+ DD+ ++ RILE  L    Y V T      AL +  +     ++V+ DV MP +DG+ + + I  E D+P+IM++A G V+  + G+  GA DY++KP   +EL+   + V+R+
Sbjct:    9 KILIADDESSIRRILETRLSIIGYEVLTAPDGRSALFLFHKEHP--NLVVLDVMMPKIDGYGVCQEIRKESDIPIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRR 124          
The following BLAST results are available for this feature:
BLAST of CX308789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ZRAR_ECOLI2.107e-1341.28Transcriptional regulatory protein zraR OS=Escheri... [more]
CITT_BACHD2.751e-1335.25Transcriptional regulatory protein citT OS=Bacillu... [more]
YCF27_PORAE4.693e-1332.58Probable transcriptional regulator ycf27 OS=Porphy... [more]
ZRAR_KLEOX1.045e-1238.53Transcriptional regulatory protein zraR OS=Klebsie... [more]
ZRAR_SALTY1.783e-1239.45Transcriptional regulatory protein zraR OS=Salmone... [more]
ZRAR_SALTI1.783e-1239.45Transcriptional regulatory protein zraR OS=Salmone... [more]
YCF27_CYACA3.973e-1233.61Probable transcriptional regulator ycf27 OS=Cyanid... [more]
APRR2_ARATH3.973e-1234.56Two-component response regulator-like APRR2 OS=Ara... [more]
NTRC_AZOC56.776e-1239.64Nitrogen assimilation regulatory protein ntrC OS=A... [more]
YCF27_GALSU8.850e-1233.90Probable transcriptional regulator ycf27 OS=Galdie... [more]

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Properties
Property NameValue
Genbank descriptionC21003G12Rv AbsLeaSub1 Citrus clementina cDNA clone C21003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308789 ID=CX308789; Name=CX308789; organism=Citrus clementina; type=EST; length=655bp
AGCCTTATCAATCCCAAGCTGATTTACAGCACTGACAAATTGCTGATGTA
GCTCTACTGACCACACTACACGTGGTTTCTTTGTCGTGGAAGGATCATCG
CTTTCCAGTTCACCATCATCTTCTTCTTTAGCACTAATCCTCTTTCTCTG
AGCTTTAAATGTTCCTTCTGTTCCTTCGTTAACAGAAGAAGCATATTCAA
TTTCATCACTTCCTCTTTTATGATGATCAGTTTCTTCCAAGCTGCCAGAA
TTTTCATGTTCTTTATTTTCATTCCACCTTTTCCGAACAACATGCTGCCA
TATATTCTTAAGCTCCTCTTCACGTATAGGCTTAATCAAGTAATCACAAG
CTCCATGTCTAATTCCCCTCATAACAGCAGATACCCTTCCATCAGCTGAC
ATCATGATAACAGGAAGATCCATTTCAAGTCCAATATGTTCAAGAAGTTT
GAAGCCATCCATATCAGGCATGTGAACGTCACTTAACACCACATCAAAAC
AGCCCTTCCTCTCCCGTAGAATATTCAAAGCAACAGCTGCCTGGGAGCAT
GTAGTTACGTTGTAGAGGCATCGACGAAGCATCTGCTCGAGAATTCGCAN
GACAGTAATGTCATCGTCAACAACAAGAACCCTTAGTCCAGCAGGAAACT
GATCA
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