CX308839

Overview
NameCX308839
Unique NameCX308839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length218
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig961 contig Ccv1_Contig961:1..218. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308839 vs. ExPASy Swiss-Prot
Match: RL30_MOUSE (60S ribosomal protein L30 OS=Mus musculus GN=Rpl30 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.714e-13
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 2
Query:   71 ESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 217
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL+IL+NNCP LRKSEI
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60          
BLAST of CX308839 vs. ExPASy Swiss-Prot
Match: RL30_MACFA (60S ribosomal protein L30 OS=Macaca fascicularis GN=RPL30 PE=3 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 2.714e-13
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 2
Query:   71 ESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 217
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL+IL+NNCP LRKSEI
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60          
BLAST of CX308839 vs. ExPASy Swiss-Prot
Match: RL30_HUMAN (60S ribosomal protein L30 OS=Homo sapiens GN=RPL30 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.714e-13
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 2
Query:   71 ESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 217
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL+IL+NNCP LRKSEI
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60          
BLAST of CX308839 vs. ExPASy Swiss-Prot
Match: RL30_CHICK (60S ribosomal protein L30 OS=Gallus gallus GN=RPL30 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.714e-13
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 2
Query:   71 ESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 217
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL+IL+NNCP LRKSEI
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60          
BLAST of CX308839 vs. ExPASy Swiss-Prot
Match: RL30_BOVIN (60S ribosomal protein L30 OS=Bos taurus GN=RPL30 PE=3 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 2.714e-13
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 2
Query:   71 ESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 217
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL+IL+NNCP LRKSEI
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60          
BLAST of CX308839 vs. ExPASy Swiss-Prot
Match: RL30_SPOFR (60S ribosomal protein L30 OS=Spodoptera frugiperda GN=RpL30 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.544e-13
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 2
Query:   71 ESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 217
            ESIN+RLALVMKSGKY LGYK  L++LR  K KL+I++ N PPLRKSEI
Sbjct:   12 ESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 60          
BLAST of CX308839 vs. ExPASy Swiss-Prot
Match: RL30A_SCHPO (60S ribosomal protein L30-1 OS=Schizosaccharomyces pombe GN=rpl30a PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.347e-12
Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = 2
Query:   71 ESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 217
            ++IN +LAL MKSGKY LGYK+ L++LR+ K KLI+++ NCPPLRKSE+
Sbjct:   14 DTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSEL 62          
BLAST of CX308839 vs. ExPASy Swiss-Prot
Match: RL30_ICTPU (60S ribosomal protein L30 OS=Ictalurus punctatus GN=rpl30 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.297e-12
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 2
Query:   71 ESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 217
            ESIN+RL LVMKSGKY LGYK   + +R  K KL+IL+NNCP LRKSEI
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQSQKMIRQGKAKLVILANNCPALRKSEI 60          
BLAST of CX308839 vs. ExPASy Swiss-Prot
Match: RL30_YEAST (60S ribosomal protein L30 OS=Saccharomyces cerevisiae GN=RPL30 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.140e-11
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 2
Query:   71 ESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 217
            ESIN +LALV+KSGKYTLGYK+ ++SLR  K KLII++ N P LRKSE+
Sbjct:    8 ESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSEL 56          
BLAST of CX308839 vs. ExPASy Swiss-Prot
Match: RL30B_SCHPO (60S ribosomal protein L30-2 OS=Schizosaccharomyces pombe GN=rpl30b PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.140e-11
Identity = 30/49 (61.22%), Postives = 42/49 (85.71%), Query Frame = 2
Query:   71 ESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 217
            ++IN++LAL MKSGKY LGYK+ L++LR+ K KLI+++ N PPLRKSE+
Sbjct:   22 DTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRKSEL 70          
The following BLAST results are available for this feature:
BLAST of CX308839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL30_MOUSE2.714e-1371.4360S ribosomal protein L30 OS=Mus musculus GN=Rpl30... [more]
RL30_MACFA2.714e-1371.4360S ribosomal protein L30 OS=Macaca fascicularis G... [more]
RL30_HUMAN2.714e-1371.4360S ribosomal protein L30 OS=Homo sapiens GN=RPL30... [more]
RL30_CHICK2.714e-1371.4360S ribosomal protein L30 OS=Gallus gallus GN=RPL3... [more]
RL30_BOVIN2.714e-1371.4360S ribosomal protein L30 OS=Bos taurus GN=RPL30 P... [more]
RL30_SPOFR3.544e-1371.4360S ribosomal protein L30 OS=Spodoptera frugiperda... [more]
RL30A_SCHPO1.347e-1263.2760S ribosomal protein L30-1 OS=Schizosaccharomyces... [more]
RL30_ICTPU2.297e-1269.3960S ribosomal protein L30 OS=Ictalurus punctatus G... [more]
RL30_YEAST1.140e-1167.3560S ribosomal protein L30 OS=Saccharomyces cerevis... [more]
RL30B_SCHPO1.140e-1161.2260S ribosomal protein L30-2 OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC21004D09Rv AbsLeaSub1 Citrus clementina cDNA clone C21004D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308839 ID=CX308839; Name=CX308839; organism=Citrus clementina; type=EST; length=218bp
GNCGGGGTCTTTTTTGGGTGCAACCAAACAATCGAAAATGGTTACAAGCA
AGAAGACAAAGAAGACTCATGAGAGCATCAACAATAGGTTGGCTCTTGTG
ATGAAGAGCGGCAAATACACTCTTGGTTACAAAACTGTTCTTCGATCTCT
CAGGGCCTCTAAGGGAAAGTTGATTATTTTGTCAAATAATTGCCCACCGT
TGAGAAAATCAGAGATTG
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