CX308893

Overview
NameCX308893
Unique NameCX308893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length368
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308893 vs. ExPASy Swiss-Prot
Match: EIF1_MOUSE (Eukaryotic translation initiation factor 1 OS=Mus musculus GN=Eif1 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  190 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 366
            +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F C
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69          
BLAST of CX308893 vs. ExPASy Swiss-Prot
Match: EIF1_HUMAN (Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  190 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 366
            +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F C
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69          
BLAST of CX308893 vs. ExPASy Swiss-Prot
Match: EIF1_BOVIN (Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  190 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 366
            +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F C
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69          
BLAST of CX308893 vs. ExPASy Swiss-Prot
Match: EIF1B_PIG (Eukaryotic translation initiation factor 1b OS=Sus scrofa GN=EIF1B PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  190 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 366
            +FDPFA+A   D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F C
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69          
BLAST of CX308893 vs. ExPASy Swiss-Prot
Match: EIF1B_MOUSE (Eukaryotic translation initiation factor 1b OS=Mus musculus GN=Eif1b PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  190 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 366
            +FDPFA+A   D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F C
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69          
BLAST of CX308893 vs. ExPASy Swiss-Prot
Match: EIF1B_MACFA (Eukaryotic translation initiation factor 1b OS=Macaca fascicularis GN=EIF1B PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  190 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 366
            +FDPFA+A   D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F C
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69          
BLAST of CX308893 vs. ExPASy Swiss-Prot
Match: EIF1B_HUMAN (Eukaryotic translation initiation factor 1b OS=Homo sapiens GN=EIF1B PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  190 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 366
            +FDPFA+A   D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F C
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFAC 69          
BLAST of CX308893 vs. ExPASy Swiss-Prot
Match: SUI1_ASHGO (Protein translation factor SUI1 OS=Ashbya gossypii GN=SUI1A PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 1
Query:  190 AFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 366
            +FDPFA+    D  A S +Y+HIR+QQRNGRK+LTTVQG+ +E+   +ILK L+K+F C
Sbjct:    8 SFDPFADTG--DDEASSSNYIHIRIQQRNGRKTLTTVQGIPEEYDLKRILKVLRKDFGC 64          
BLAST of CX308893 vs. ExPASy Swiss-Prot
Match: SUI1_YEAST (Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces cerevisiae GN=SUI1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1
Query:  190 AFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 366
            +FDPFA+    D    + +Y+HIR+QQRNGRK+LTTVQG+ +E+   +ILK LKK+F C
Sbjct:    8 SFDPFADTG--DDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFAC 64          
BLAST of CX308893 vs. ExPASy Swiss-Prot
Match: SUI1_SCHPO (Protein translation factor sui1 OS=Schizosaccharomyces pombe GN=sui1 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.338e-11
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1
Query:  196 DPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCC 366
            DPFA+   +D  A   + +HIR+QQRNGRK+LTTVQGL +EF   +IL+ LKK+F C
Sbjct:   11 DPFADTGDDD--AQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFAC 65          
The following BLAST results are available for this feature:
BLAST of CX308893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
EIF1_MOUSE2.731e-1354.10Eukaryotic translation initiation factor 1 OS=Mus ... [more]
EIF1_HUMAN2.731e-1354.10Eukaryotic translation initiation factor 1 OS=Homo... [more]
EIF1_BOVIN2.731e-1354.10Eukaryotic translation initiation factor 1 OS=Bos ... [more]
EIF1B_PIG3.567e-1354.10Eukaryotic translation initiation factor 1b OS=Sus... [more]
EIF1B_MOUSE3.567e-1354.10Eukaryotic translation initiation factor 1b OS=Mus... [more]
EIF1B_MACFA3.567e-1354.10Eukaryotic translation initiation factor 1b OS=Mac... [more]
EIF1B_HUMAN3.567e-1354.10Eukaryotic translation initiation factor 1b OS=Hom... [more]
SUI1_ASHGO1.038e-1255.93Protein translation factor SUI1 OS=Ashbya gossypii... [more]
SUI1_YEAST1.770e-1254.24Eukaryotic translation initiation factor eIF-1 OS=... [more]
SUI1_SCHPO3.338e-1156.14Protein translation factor sui1 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionC21005C05Rv AbsLeaSub1 Citrus clementina cDNA clone C21005C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308893 ID=CX308893; Name=CX308893; organism=Citrus clementina; type=EST; length=368bp
GCGGGATCTCTGTCTCTCTCTCTCTCTGGCTTCTCTTGTTTCCGCTCTCG
TAAGGCAGTTTGATTCGCAATCTTCCTCTTAAGCTAAGAGCAATTTAAGT
GAATTGAAGCCAATTTCTTGCTGGTTACGGACTCTTTGACACTCCAACAA
CCAAGTTTCATGTCTGAATTTGACACCCAGATTCCATCTGCCTTTGATCC
CTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGTTCAAAAGATTATG
TGCATATTCGCGTGCAGCAACGTAATGGGAGGAAAAGCCTGACAACTGTG
CAAGGGTTGAAGAAAGAATTCAGCTACAACAAGATTCTCAAGGACCTCAA
GAAAGAGTTCTGCTGTAA
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