CX308911

Overview
NameCX308911
Unique NameCX308911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length244
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig961 contig Ccv1_Contig961:1..219. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30_MOUSE (60S ribosomal protein L30 OS=Mus musculus GN=Rpl30 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.587e-13
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = -3
Query:    3 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 149
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL++L+NNCP LRKSEI
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30_MACFA (60S ribosomal protein L30 OS=Macaca fascicularis GN=RPL30 PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.587e-13
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = -3
Query:    3 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 149
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL++L+NNCP LRKSEI
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30_HUMAN (60S ribosomal protein L30 OS=Homo sapiens GN=RPL30 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.587e-13
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = -3
Query:    3 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 149
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL++L+NNCP LRKSEI
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30_CHICK (60S ribosomal protein L30 OS=Gallus gallus GN=RPL30 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.587e-13
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = -3
Query:    3 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 149
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL++L+NNCP LRKSEI
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30_BOVIN (60S ribosomal protein L30 OS=Bos taurus GN=RPL30 PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.587e-13
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = -3
Query:    3 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 149
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL++L+NNCP LRKSEI
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30A_SCHPO (60S ribosomal protein L30-1 OS=Schizosaccharomyces pombe GN=rpl30a PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.587e-13
Identity = 33/49 (67.35%), Postives = 42/49 (85.71%), Query Frame = -3
Query:    3 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 149
            ++IN +LAL MKSGKY LGYK+ L++LRS K KLIL++ NCPPLRKSE+
Sbjct:   14 DTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSEL 62          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30_SPOFR (60S ribosomal protein L30 OS=Spodoptera frugiperda GN=RpL30 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.685e-13
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = -3
Query:    3 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 149
            ESIN+RLALVMKSGKY LGYK  L++LR  K KL++++ N PPLRKSEI
Sbjct:   12 ESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 60          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30_ICTPU (60S ribosomal protein L30 OS=Ictalurus punctatus GN=rpl30 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.037e-12
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = -3
Query:    3 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 149
            ESIN+RL LVMKSGKY LGYK   + +R  K KL++L+NNCP LRKSEI
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQSQKMIRQGKAKLVILANNCPALRKSEI 60          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30B_SCHPO (60S ribosomal protein L30-2 OS=Schizosaccharomyces pombe GN=rpl30b PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.037e-12
Identity = 32/49 (65.31%), Postives = 42/49 (85.71%), Query Frame = -3
Query:    3 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 149
            ++IN++LAL MKSGKY LGYK+ L++LRS K KLIL++ N PPLRKSE+
Sbjct:   22 DTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRKSEL 70          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30_YEAST (60S ribosomal protein L30 OS=Saccharomyces cerevisiae GN=RPL30 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.507e-11
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = -3
Query:    3 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 149
            ESIN +LALV+KSGKYTLGYK+ ++SLR  K KLI+++ N P LRKSE+
Sbjct:    8 ESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSEL 56          
The following BLAST results are available for this feature:
BLAST of CX308911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL30_MOUSE3.587e-1369.3960S ribosomal protein L30 OS=Mus musculus GN=Rpl30... [more]
RL30_MACFA3.587e-1369.3960S ribosomal protein L30 OS=Macaca fascicularis G... [more]
RL30_HUMAN3.587e-1369.3960S ribosomal protein L30 OS=Homo sapiens GN=RPL30... [more]
RL30_CHICK3.587e-1369.3960S ribosomal protein L30 OS=Gallus gallus GN=RPL3... [more]
RL30_BOVIN3.587e-1369.3960S ribosomal protein L30 OS=Bos taurus GN=RPL30 P... [more]
RL30A_SCHPO3.587e-1367.3560S ribosomal protein L30-1 OS=Schizosaccharomyces... [more]
RL30_SPOFR4.685e-1369.3960S ribosomal protein L30 OS=Spodoptera frugiperda... [more]
RL30_ICTPU3.037e-1267.3560S ribosomal protein L30 OS=Ictalurus punctatus G... [more]
RL30B_SCHPO3.037e-1265.3160S ribosomal protein L30-2 OS=Schizosaccharomyces... [more]
RL30_YEAST1.507e-1165.3160S ribosomal protein L30 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC21005F02Rv AbsLeaSub1 Citrus clementina cDNA clone C21005F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308911 ID=CX308911; Name=CX308911; organism=Citrus clementina; type=EST; length=244bp
TCAATCTCTGATTTTCTCAACGGTGGGCAATTATTTGACAAAAGAATCAA
CTTTCCCTTAGAGCTTCTGAGAGATCGAAGAACAGTTTTGTAACCAAGAG
TGTATTTGCCGCTCTTCATCACAAGAGCAAGCCTGTTGTTGATGCTCTCA
TGAGTCTTCTTCGTCTTCTTGCTTGTGACCATTTTCGACTGTTTGGTTGC
ACCAAAAAGACTTTGCGGGAGGCGGCAAAGTAACAAACGACCCG
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