CX308926

Overview
NameCX308926
Unique NameCX308926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length291
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.622e-14
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YD LFKL+LIGDSGVGK+ +L RF+ + FN    STIG++F  +++ +  K +K QIWDTAGQ
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQ 68          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.257e-13
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YD LFKL+LIGDSGVGK+ +L RF+ + FN    STIG++F  +++ +  K +K QIWDTAGQ
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQ 68          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.641e-13
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YD+L KL+LIGDSGVGKS LL RF+   F     +TIG++F  R++ ++ K +K QIWDTAGQ
Sbjct:   12 YDFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQ 74          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB7_ARATH (Ras-related protein Rab7 OS=Arabidopsis thaliana GN=RAB7 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.641e-13
Identity = 30/60 (50.00%), Postives = 50/60 (83.33%), Query Frame = 2
Query:  110 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            L K++++GDSGVGK++L++++  N+F+ + K+TIG +F T+ L+ID+++V  QIWDTAGQ
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVNNKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB4A_RAT (Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.641e-13
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            E YD+LFK ++IG++G GKS LL +F + +F  +S  TIGVEF ++ + +  K VK QIWDTAGQ
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.641e-13
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            E YD+LFK ++IG++G GKS LL +F + +F  +S  TIGVEF ++ + +  K VK QIWDTAGQ
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB4A_BOVIN (Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.641e-13
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            E YD+LFK ++IG++G GKS LL +F + +F  +S  TIGVEF ++ + +  K VK QIWDTAGQ
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.641e-13
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            E+YD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++ I+ + VK QIWDTAGQ
Sbjct:    4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 68          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.641e-13
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            E+YD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++ I+ + VK QIWDTAGQ
Sbjct:    4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 68          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.641e-13
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            E+YD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++ I+ + VK QIWDTAGQ
Sbjct:    4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 68          
The following BLAST results are available for this feature:
BLAST of CX308926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
RAB10_CANFA9.622e-1455.56Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RAB10_DISOM1.257e-1355.56Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RAB8B_DICDI1.641e-1355.56Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB7_ARATH1.641e-1350.00Ras-related protein Rab7 OS=Arabidopsis thaliana G... [more]
RAB4A_RAT1.641e-1352.31Ras-related protein Rab-4A OS=Rattus norvegicus GN... [more]
RAB4A_HUMAN1.641e-1352.31Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4... [more]
RAB4A_BOVIN1.641e-1352.31Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A ... [more]
RAB30_MOUSE1.641e-1353.85Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN1.641e-1353.85Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN1.641e-1353.85Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]

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Properties
Property NameValue
Genbank descriptionC21006A01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308926 ID=CX308926; Name=CX308926; organism=Citrus clementina; type=EST; length=291bp
TTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAGTGAA
CAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGAGGAG
TATGATTACCTTTTCAAGTTGGTTTTGATTGGAGACTCAGGCGTTGGTAA
ATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAATCAA
AGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGATAAC
AAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGA
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