CX308926

Overview
NameCX308926
Unique NameCX308926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length291
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.641e-13
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            Y YLFK ++IGD+GVGKS LL +FT   F      T+GVEF  R + ID K +K QIWDTAGQ
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQ 65          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.144e-13
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YD L KL+LIGDSGVGKS LL RF +++F     +TIG++F  R++ I N+ VK Q+WDTAGQ
Sbjct:    8 YDLLIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQ 70          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: YPTV3_VOLCA (GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.800e-13
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            + +DY FK++L+GDSGVGKS +L+RFT   F   + STIGV+F  + L  D K  K  IWDTAGQ
Sbjct:    4 DSHDYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTIWDTAGQ 68          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.656e-13
Identity = 34/65 (52.31%), Postives = 49/65 (75.38%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            + YD + K++LIGDSGVGKS LL RF +++FN    +TIG++F  +++ I+ K VK Q+WDTAGQ
Sbjct:   15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.656e-13
Identity = 34/65 (52.31%), Postives = 49/65 (75.38%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            + YD + K++LIGDSGVGKS LL RF +++FN    +TIG++F  +++ I+ K VK Q+WDTAGQ
Sbjct:   15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB4A_MOUSE (Ras-related protein Rab-4A OS=Mus musculus GN=Rab4a PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.656e-13
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            E YD+LFK ++IG++G GKS LL +F + +F  +S  TIG+EF ++ + +  K VK QIWDTAGQ
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGMEFGSKIINVGGKYVKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB9B_PONAB (Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9B PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.775e-13
Identity = 32/60 (53.33%), Postives = 45/60 (75.00%), Query Frame = 2
Query:  110 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            L K++L+GD GVGKS+L++R+  N+F+ ++  TIGVEF  R L +D + V  QIWDTAGQ
Sbjct:    7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB9B_MOUSE (Ras-related protein Rab-9B OS=Mus musculus GN=Rab9b PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.775e-13
Identity = 32/60 (53.33%), Postives = 45/60 (75.00%), Query Frame = 2
Query:  110 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            L K++L+GD GVGKS+L++R+  N+F+ ++  TIGVEF  R L +D + V  QIWDTAGQ
Sbjct:    7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB9B_HUMAN (Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9B PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.775e-13
Identity = 32/60 (53.33%), Postives = 45/60 (75.00%), Query Frame = 2
Query:  110 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            L K++L+GD GVGKS+L++R+  N+F+ ++  TIGVEF  R L +D + V  QIWDTAGQ
Sbjct:    7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.775e-13
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YD LFKL+LIGDSGVGK+ +L RF+ + FN    STIG++   +++ +  K +K QIWDTAGQ
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQ 68          
The following BLAST results are available for this feature:
BLAST of CX308926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
RAB2A_RAT1.641e-1357.14Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RYL1_YARLI2.144e-1357.14Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
YPTV3_VOLCA2.800e-1353.85GTP-binding protein yptV3 OS=Volvox carteri GN=YPT... [more]
SEC4_YEAST3.656e-1352.31Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]
SEC4_CANGA3.656e-1352.31Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]
RAB4A_MOUSE3.656e-1350.77Ras-related protein Rab-4A OS=Mus musculus GN=Rab4... [more]
RAB9B_PONAB4.775e-1353.33Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9... [more]
RAB9B_MOUSE4.775e-1353.33Ras-related protein Rab-9B OS=Mus musculus GN=Rab9... [more]
RAB9B_HUMAN4.775e-1353.33Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9... [more]
RAB10_CHICK4.775e-1353.97Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionC21006A01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308926 ID=CX308926; Name=CX308926; organism=Citrus clementina; type=EST; length=291bp
TTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAGTGAA
CAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGAGGAG
TATGATTACCTTTTCAAGTTGGTTTTGATTGGAGACTCAGGCGTTGGTAA
ATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAATCAA
AGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGATAAC
AAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGA
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