CX308926

Overview
NameCX308926
Unique NameCX308926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length291
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.237e-13
Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YD + KL+L+GDSGVGKS LL RF +++FN    +TIG++F  R++    K +K Q+WDTAGQ
Sbjct:   11 YDMIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQ 73          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RABF1_DICDI (Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.146e-13
Identity = 34/65 (52.31%), Postives = 49/65 (75.38%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            +EY++LFK VL GDSGVGK+++L R T + F  E+  TIG+EF  +++ I+ K +K QIWDTAG+
Sbjct:    3 KEYEHLFKFVLAGDSGVGKTSILFRITDDTFT-ETHITIGIEFKIKTVYIEGKPIKLQIWDTAGE 66          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB9A_RAT (Ras-related protein Rab-9A OS=Rattus norvegicus GN=Rab9a PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.146e-13
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  110 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            LFK++L+GD GVGKS+L++R+  N+F+ +   TIGVEF  + L +D   V  QIWDTAGQ
Sbjct:    7 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB9A_MOUSE (Ras-related protein Rab-9A OS=Mus musculus GN=Rab9a PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.146e-13
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  110 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            LFK++L+GD GVGKS+L++R+  N+F+ +   TIGVEF  + L +D   V  QIWDTAGQ
Sbjct:    7 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB9A_HUMAN (Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9A PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.146e-13
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  110 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            LFK++L+GD GVGKS+L++R+  N+F+ +   TIGVEF  + L +D   V  QIWDTAGQ
Sbjct:    7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB9A_CANFA (Ras-related protein Rab-9A OS=Canis familiaris GN=RAB9A PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.146e-13
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  110 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            LFK++L+GD GVGKS+L++R+  N+F+ +   TIGVEF  + L +D   V  QIWDTAGQ
Sbjct:    7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.146e-13
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YD LFKL+LIGDSGVGK+ +L RF+ + FN    STI ++F  +++ +  K +K QIWDTAGQ
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIEIDFKIKTVELQGKKIKLQIWDTAGQ 68          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: YPT4_SCHPO (GTP-binding protein ypt4 OS=Schizosaccharomyces pombe GN=ypt4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.064e-12
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 2
Query:   95 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRI----DNKVVKAQIWDTAGQ 289
            E YDYL K+VL G SG GKS LL RF KN+++ +   T+G++FA+R + +      K +K QIWDTAGQ
Sbjct:    4 ESYDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTAGQ 72          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: YPTC5_CHLRE (GTP-binding protein YPTC5 OS=Chlamydomonas reinhardtii GN=YPTC5 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.389e-12
Identity = 29/60 (48.33%), Postives = 47/60 (78.33%), Query Frame = 2
Query:  110 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            L K++++GDSGVGK++L++++ + +F  E K+TIG +F T+ + +D+K V  QIWDTAGQ
Sbjct:    8 LLKVIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKEIEVDDKKVTMQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB7_SOYBN (Ras-related protein Rab7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.389e-12
Identity = 29/60 (48.33%), Postives = 49/60 (81.67%), Query Frame = 2
Query:  110 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            L K++++GDSGVGK++L++++   +F+ + K+TIG +F T+ L+ID+++V  QIWDTAGQ
Sbjct:    8 LLKVIVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQ 67          
The following BLAST results are available for this feature:
BLAST of CX308926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
SEC4_CANAL6.237e-1352.38Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RABF1_DICDI8.146e-1352.31Ras-related protein RabF1 OS=Dictyostelium discoid... [more]
RAB9A_RAT8.146e-1353.33Ras-related protein Rab-9A OS=Rattus norvegicus GN... [more]
RAB9A_MOUSE8.146e-1353.33Ras-related protein Rab-9A OS=Mus musculus GN=Rab9... [more]
RAB9A_HUMAN8.146e-1353.33Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9... [more]
RAB9A_CANFA8.146e-1353.33Ras-related protein Rab-9A OS=Canis familiaris GN=... [more]
RAB10_RAT8.146e-1353.97Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
YPT4_SCHPO1.064e-1250.72GTP-binding protein ypt4 OS=Schizosaccharomyces po... [more]
YPTC5_CHLRE1.389e-1248.33GTP-binding protein YPTC5 OS=Chlamydomonas reinhar... [more]
RAB7_SOYBN1.389e-1248.33Ras-related protein Rab7 OS=Glycine max PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC21006A01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308926 ID=CX308926; Name=CX308926; organism=Citrus clementina; type=EST; length=291bp
TTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAGTGAA
CAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGAGGAG
TATGATTACCTTTTCAAGTTGGTTTTGATTGGAGACTCAGGCGTTGGTAA
ATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAATCAA
AGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGATAAC
AAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGA
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