CX308926

Overview
NameCX308926
Unique NameCX308926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length291
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig777 contig Ccv1_Contig777:175..465. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.864e-28
Identity = 57/66 (86.36%), Postives = 64/66 (96.97%), Query Frame = 2
Query:   92 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQ
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 6.864e-28
Identity = 57/66 (86.36%), Postives = 64/66 (96.97%), Query Frame = 2
Query:   92 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQ
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 6.864e-28
Identity = 57/66 (86.36%), Postives = 64/66 (96.97%), Query Frame = 2
Query:   92 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQ
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.997e-27
Identity = 57/68 (83.82%), Postives = 65/68 (95.59%), Query Frame = 2
Query:   86 KPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            +PDEEYDYLFK+VLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFATR+L+++ + VKAQIWDTAGQ
Sbjct:    4 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQ 71          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.884e-26
Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = 2
Query:   83 YKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            ++ D EYDYLFK+VLIGDSGVGKSN+LSRFT+NEF LESKSTIGVEFATR+L+++ K VKAQIWDTAGQ
Sbjct:    3 HRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.919e-26
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 2
Query:   92 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            D EYDYLFK+VLIGDSGVGKSN+LSRFT+NEF LESKSTIGVEFATR+L+++ K VKAQIWDTAGQ
Sbjct:    6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.919e-26
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 2
Query:   92 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            D EYDYLFK+VLIGDSGVGKSN+LSRFT+NEF LESKSTIGVEFATR+L+++ K VKAQIWDTAGQ
Sbjct:    6 DHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.424e-26
Identity = 54/66 (81.82%), Postives = 62/66 (93.94%), Query Frame = 2
Query:   92 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            ++EYDYLFK VLIGDSGVGKSNLL RFT+NEFN+ESKSTIGVEFATR++ +DNK +KAQIWDTAGQ
Sbjct:    4 EDEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQ 69          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 115.546 bits (288), Expect = 8.390e-26
Identity = 53/69 (76.81%), Postives = 64/69 (92.75%), Query Frame = 2
Query:   83 YKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            ++ D+EYDYLFK+VLIGDSGVGKSN+LSRFT+NEF LESKSTIGVEFATR+ +++ K +KAQIWDTAGQ
Sbjct:    3 HRVDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQ 71          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 4.164e-25
Identity = 52/64 (81.25%), Postives = 61/64 (95.31%), Query Frame = 2
Query:   98 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            +YDYLFK+VLIGDSGVGKSNLLSRFT +EFN+ESKSTIGVEFATR++ ++NK +KAQIWDTAGQ
Sbjct:    9 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQ 72          
The following BLAST results are available for this feature:
BLAST of CX308926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
RB11A_CHICK6.864e-2886.36Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_CANFA6.864e-2886.36Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RB11A_BOVIN6.864e-2886.36Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RAA2A_ARATH1.997e-2783.82Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB11C_LOTJA2.884e-2679.71Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB2BV_BETVU4.919e-2683.33Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11A_TOBAC4.919e-2683.33Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
YPT3_SCHPO6.424e-2681.82GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RAA2C_ARATH8.390e-2676.81Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
YPT32_YEAST4.164e-2581.25GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionC21006A01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308926 ID=CX308926; Name=CX308926; organism=Citrus clementina; type=EST; length=291bp
TTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAGTGAA
CAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGAGGAG
TATGATTACCTTTTCAAGTTGGTTTTGATTGGAGACTCAGGCGTTGGTAA
ATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAATCAA
AGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGATAAC
AAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGA
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