CX308926

Overview
NameCX308926
Unique NameCX308926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length291
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig777 contig Ccv1_Contig777:175..465. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.071e-16
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YDYLFKL+LIGDSGVGK+ LL RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQ
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.071e-16
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YDYLFKL+LIGDSGVGK+ LL RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQ
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.071e-16
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YDYLFKL+LIGDSGVGK+ LL RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQ
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.071e-16
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YDYLFKL+LIGDSGVGK+ LL RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQ
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.071e-16
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YDYLFKL+LIGDSGVGK+ LL RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQ
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.705e-16
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 2
Query:   98 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K VK QIWDTAGQ
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.705e-16
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  101 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            YDYLFKL+LIGDSGVGK+ LL RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQ
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.533e-16
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 2
Query:   98 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQ
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.533e-16
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 2
Query:   98 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQ
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67          
BLAST of CX308926 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.533e-16
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 2
Query:   98 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQ 289
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQ
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67          
The following BLAST results are available for this feature:
BLAST of CX308926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
RAB8B_RAT2.071e-1661.90Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB2.071e-1661.90Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE2.071e-1661.90Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_HUMAN2.071e-1661.90Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB8B_BOVIN2.071e-1661.90Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
YPT1_NEUCR2.705e-1664.06GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
RAB8_DISOM2.705e-1661.90Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
YPT1_PHYIN3.533e-1662.50Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB1_DISOM3.533e-1662.50Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB1B_RAT3.533e-1662.50Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC21006A01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308926 ID=CX308926; Name=CX308926; organism=Citrus clementina; type=EST; length=291bp
TTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAGTGAA
CAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGAGGAG
TATGATTACCTTTTCAAGTTGGTTTTGATTGGAGACTCAGGCGTTGGTAA
ATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAATCAA
AGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGATAAC
AAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGA
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