CX308941

Overview
NameCX308941
Unique NameCX308941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length291
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1323 contig Ccv1_Contig1323:297..587. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8_CANAL (Autophagy-related protein 8 OS=Candida albicans GN=ATG8 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.296e-14
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIPV 150
            KAIFIFV+++LPPT A++S IYEE KDEDGFLYV YSGENTFG  + +
Sbjct:   74 KAIFIFVNDILPPTAALISTIYEEHKDEDGFLYVLYSGENTFGEKLAI 121          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8_DICDI (Autophagy-related protein 8 OS=Dictyostelium discoideum GN=atg8 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.342e-14
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 1
Query:    1 AGKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHI 144
            A KAI++FV+N +PPT A++S IYE  KDEDGFLY+TYSGENTFGS +
Sbjct:   75 AEKAIYLFVNNTIPPTAALISQIYERYKDEDGFLYITYSGENTFGSDL 122          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8_MAGGR (Autophagy-related protein 8 OS=Magnaporthe grisea GN=ATG8 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.252e-13
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 135
            KAIFIFV + LPPT A+MS+IYE  KDEDGFLY+TYSGENTFG
Sbjct:   74 KAIFIFVQDTLPPTAALMSSIYELHKDEDGFLYITYSGENTFG 116          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8_CRYNE (Autophagy-related protein 8 OS=Cryptococcus neoformans GN=ATG8 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.252e-13
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 135
            KAIFIFVD++LPPT A+MS+IY+E KDEDGFLYV Y+ ENTFG
Sbjct:   75 KAIFIFVDDILPPTAALMSSIYDEHKDEDGFLYVLYASENTFG 117          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8_LODEL (Autophagy-related protein 8 OS=Lodderomyces elongisporus GN=ATG8 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.636e-13
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 135
            KAIFIFV+++LPPT A++S IYEE KD+DGFLYV YSGENTFG
Sbjct:   74 KAIFIFVNDILPPTAALISTIYEEHKDDDGFLYVLYSGENTFG 116          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8_ASHGO (Autophagy-related protein 8 OS=Ashbya gossypii GN=ATG8 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.636e-13
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    1 AGKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 138
            A KAIFIFV++ LPPT A+M A+Y+E KD+DGFLYV YSGENTFGS
Sbjct:   71 AEKAIFIFVNDTLPPTAALMFAVYQEHKDKDGFLYVKYSGENTFGS 116          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8_PICAN (Autophagy-related protein 8 OS=Pichia angusta GN=ATG8 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.136e-13
Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 135
            KAIFIFV+++LPPT ++MS IYE+ KDEDGFLY+ YSGENTFG
Sbjct:   74 KAIFIFVNDILPPTASLMSTIYEQYKDEDGFLYILYSGENTFG 116          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8_CANGA (Autophagy-related protein 8 OS=Candida glabrata GN=ATG8 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.790e-13
Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 135
            KAIFIFV++ LPPT ++MS +Y+E KD+DGFLYVTYSGENTFG
Sbjct:   74 KAIFIFVNDTLPPTASLMSQVYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8_KLULA (Autophagy-related protein 8 OS=Kluyveromyces lactis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 AGKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 135
            A KAIFIFV++ LPPT A+MS+IY++ KD+DGFLYV+YS ENTFG
Sbjct:   72 AEKAIFIFVNDTLPPTAALMSSIYQQHKDKDGFLYVSYSSENTFG 116          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.817e-11
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    7 KAIFIFVD-NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHI 144
            KAIF+FV+ N LPP+  ++S+IY+  KDEDGFLY+ YSGENTFGS I
Sbjct:   80 KAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFGSDI 126          
The following BLAST results are available for this feature:
BLAST of CX308941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
ATG8_CANAL3.296e-1470.83Autophagy-related protein 8 OS=Candida albicans GN... [more]
ATG8_DICDI7.342e-1468.75Autophagy-related protein 8 OS=Dictyostelium disco... [more]
ATG8_MAGGR1.252e-1379.07Autophagy-related protein 8 OS=Magnaporthe grisea ... [more]
ATG8_CRYNE1.252e-1376.74Autophagy-related protein 8 OS=Cryptococcus neofor... [more]
ATG8_LODEL1.636e-1376.74Autophagy-related protein 8 OS=Lodderomyces elongi... [more]
ATG8_ASHGO1.636e-1373.91Autophagy-related protein 8 OS=Ashbya gossypii GN=... [more]
ATG8_PICAN2.136e-1374.42Autophagy-related protein 8 OS=Pichia angusta GN=A... [more]
ATG8_CANGA2.790e-1374.42Autophagy-related protein 8 OS=Candida glabrata GN... [more]
ATG8_KLULA1.060e-1271.11Autophagy-related protein 8 OS=Kluyveromyces lacti... [more]
ATG8L_DICDI5.817e-1165.96Autophagy-related protein 8-like protein DDB_G0290... [more]

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Properties
Property NameValue
Genbank descriptionC21006C02Rv AbsLeaSub1 Citrus clementina cDNA clone C21006C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308941 ID=CX308941; Name=CX308941; organism=Citrus clementina; type=EST; length=291bp
GCGGGAAAGGCGATATTTATTTTTGTGGATAATGTGCTCCCACCTACAGG
TGCAATTATGTCTGCCATATACGAAGAGAAAAAGGATGAAGATGGTTTTC
TTTATGTGACTTACAGTGGGGAGAACACATTTGGAAGCCACATCCCAGTT
TAGCCTTGTGATTATCTATCTGCTCATTGTGTGGTTTCTTGTGCGACCAC
ATTTTTATCTCAATTATCATCCTTGCTTTCCGCTGAATATTCCTTTATCG
GGCATATTTTATATTTTATAAAGACATTGCCAGTGATAATA
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