CX308963

Overview
NameCX308963
Unique NameCX308963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX308963_ssr353 microsatellite CX308963_ssr353:353..367. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11238 contig Ccv1_Contig11238:419..1022. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.121e-26
Identity = 50/87 (57.47%), Postives = 67/87 (77.01%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            I+ H EG+W+ L  ++GLKR GKSCRLRW NYL+P +KRGN++  E+  I+ LH+  GNRWS IA  LPGRTDNEIKN+W + ++K+
Sbjct:   31 ITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKR 117          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.121e-26
Identity = 51/86 (59.30%), Postives = 66/86 (76.74%), Query Frame = 1
Query:   25 WNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 282
            W  + K +GLKR GKSCRLRW NYL+PD+KRG L+  E+  +++LHS+ GNRWSKIA  LPGRTDNEIKN+W T ++K+   + ID
Sbjct:   37 WRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGID 122          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.121e-26
Identity = 50/93 (53.76%), Postives = 71/93 (76.34%), Query Frame = 1
Query:   10 HSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDAN 288
            + +G W+ +AK +GL+R GKSCRLRW+NYL+PD+KRG  +PQE+  I+  HS  GNRWS+IA  LPGRTDNEIKN+W + ++K+ + +   +N
Sbjct:   38 NGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKKMSDTSN 130          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.030e-26
Identity = 52/89 (58.43%), Postives = 66/89 (74.16%), Query Frame = 1
Query:   25 WNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS 291
            W  + K +GL R GKSCRLRW NYL+PD+KRG  +  E+  IL+LH+  GNRWS+IA  LPGRTDNEIKNYW TR++K+ R   +D N+
Sbjct:   37 WRAIPKLAGLLRCGKSCRLRWTNYLRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLRSQGLDPNT 125          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 9.181e-26
Identity = 52/94 (55.32%), Postives = 68/94 (72.34%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 282
            I RH  G W+ + + + L R GKSCRLRW+NYL+PD+KRG  + QE+  I+ LH   GNRWS+IA HLPGRTDNEIKN+W + ++K+ R   ID
Sbjct:   31 IIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLRQQGID 124          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.671e-25
Identity = 48/88 (54.55%), Postives = 67/88 (76.14%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQA 264
            +  H EG+W  + +++GL+R GKSCRLRWLNYL+P+++RGN++  E+  I+ LH   GNRWS IA  LPGRTDNEIKNYW + + ++A
Sbjct:   29 VKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYLRPNIRRGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSTLGRRA 116          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB75_ARATH (Transcription factor MYB75 OS=Arabidopsis thaliana GN=MYB75 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.914e-23
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            I+++ EG+W+ +  R+GL R  KSCRLRWLNYLKP +KRG L+  E   +L LH   GNRWS IA  LPGRT N++KNYW T + K+
Sbjct:   25 INKYGEGKWHQVPVRAGLNRCRKSCRLRWLNYLKPSIKRGKLSSDEVDLLLRLHRLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB90_ARATH (Transcription factor MYB90 OS=Arabidopsis thaliana GN=MYB90 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.500e-23
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            I ++ EG+W+ +  R+GL R  KSCRLRWLNYLKP +KRG L+  E   +L LH   GNRWS IA  LPGRT N++KNYW T + K+
Sbjct:   25 IDKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGRLSNDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MY113_ARATH (Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.500e-23
Identity = 48/87 (55.17%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            I ++ EG+W+ +  R+GL R  KSCRLRWLNYLKP +KRG L   E   +L LH   GNRWS IA  LPGRT N++KNYW T + K+
Sbjct:   25 IDKYGEGKWHRVPLRTGLNRCRKSCRLRWLNYLKPSIKRGKLCSDEVDLVLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MY114_ARATH (Transcription factor MYB114 OS=Arabidopsis thaliana GN=MYB114 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.570e-23
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            I ++ EG+W+ +  R+GL R  KSCRLRWLNYLKP +KRG  +  E   +L LH   GNRWS IA  LPGRT N++KNYW T + K+
Sbjct:   25 IGKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGKFSSDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
The following BLAST results are available for this feature:
BLAST of CX308963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
TT2_ARATH4.121e-2657.47Transcription factor TT2 OS=Arabidopsis thaliana G... [more]
ODO1_PETHY4.121e-2659.30Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]
MYB46_ARATH4.121e-2653.76Transcription factor MYB46 OS=Arabidopsis thaliana... [more]
MYB2_PHYPA7.030e-2658.43Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
MYB3_HORVU9.181e-2655.32Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB... [more]
MYBC_MAIZE2.671e-2554.55Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]
MYB75_ARATH1.914e-2355.17Transcription factor MYB75 OS=Arabidopsis thaliana... [more]
MYB90_ARATH2.500e-2355.17Transcription factor MYB90 OS=Arabidopsis thaliana... [more]
MY113_ARATH2.500e-2355.17Transcription factor MYB113 OS=Arabidopsis thalian... [more]
MY114_ARATH5.570e-2354.02Transcription factor MYB114 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionC21006F01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308963 ID=CX308963; Name=CX308963; organism=Citrus clementina; type=EST; length=604bp
ATATCTCGGCACAGCGAAGGCCGATGGAATTTGCTAGCAAAACGTTCGGG
CTTGAAGAGAACTGGGAAAAGTTGCAGATTGAGATGGCTAAATTATCTGA
AACCTGATGTGAAGAGAGGCAATCTCACTCCACAAGAACAAATGTCAATT
CTTGAACTCCATTCTAAGTGGGGTAATAGGTGGTCGAAGATTGCTCAGCA
CTTACCAGGAAGGACTGACAATGAAATCAAGAACTATTGGAGAACTCGTG
TTCAGAAGCAAGCACGGCATCTAAAGATAGACGCAAATAGCACGACATTT
CAAGAGATTATTCGATGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGA
CACATCATCATCATCATCACCATCGGCTTTATCTCAGAATCCTACAATTA
ATTCTCAGCCGTTTGATCATGCTTTTCATCATCAGGGATCAGCATCGGCA
CAAATAATATCCCATCAAGTTCCTTACGATCGGGGAGTGATTGATCATCA
AGAATTGAATTCATCATCAGACTCGGAGCACGGCATTGGCACCAGCACTT
CCTGCATTTCTTCATCCGAATCAATGAATTTTTCCCAAGTGTCTCAGTTT
TCGG
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