CX308963

Overview
NameCX308963
Unique NameCX308963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX308963_ssr353 microsatellite CX308963_ssr353:353..367. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11238 contig Ccv1_Contig11238:419..1022. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.371e-28
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            I  + EG W  L K +GLKR GKSCRLRW+NYL+ D+KRGN+TP+E+  +++LHS  GNRWS IA HLPGRTDNEIKNYW + + ++
Sbjct:   29 IQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYWNSHLSRK 115          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.403e-28
Identity = 50/89 (56.18%), Postives = 70/89 (78.65%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQAR 267
            + +H EG WN + K +GL R GKSCRLRW N+L+P++K+G  T +E+  I++LHSK GN+W+++A HLPGRTDNEIKNYW TR+++  R
Sbjct:   57 VKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQR 145          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.403e-28
Identity = 50/89 (56.18%), Postives = 70/89 (78.65%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQAR 267
            + +H EG WN + K +GL R GKSCRLRW N+L+P++K+G  T +E+  I++LHSK GN+W+++A HLPGRTDNEIKNYW TR+++  R
Sbjct:   57 VKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQR 145          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.511e-28
Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            I+ H EG W  L K +GL R GKSCRLRW+NYL+ DVKRGN++ +E+  I++LH+  GNRWS IA HLPGRTDNEIKNYW + + +Q
Sbjct:   29 IAEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQ 115          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.809e-28
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            +  H EG W  +++RSGLKR GKSCRLRW NYL+P++KRG+++PQEQ  I+ +H   GNRWS IA  LPGRTDNE+KNYW T + K+
Sbjct:   29 VETHGEGNWADISRRSGLKRGGKSCRLRWKNYLRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKK 115          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.809e-28
Identity = 56/97 (57.73%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS 291
            I  H EG W  L K +GL R GKSCRLRW+NYL+PD+KRGN T +E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T ++++  +  ID  S
Sbjct:   29 IKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDPTS 125          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.809e-28
Identity = 51/87 (58.62%), Postives = 66/87 (75.86%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            +  H +G WN +AK++GLKR GKSCRLRW+NYL P+V RGN T QE+  I+ LH   GNRWS IA+ +PGRTDN++KNYW T + K+
Sbjct:   29 VRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 115          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.854e-27
Identity = 56/112 (50.00%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ--------ARHLKIDANSTTFQEII 312
            I  H EG W  L K +GL R GKSCRLRW+NYL+PD+KRGN T  E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T ++++          H +I+ + T   +++
Sbjct:   29 IRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDPQTHRQINESKTVSSQVV 140          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.854e-27
Identity = 56/94 (59.57%), Postives = 66/94 (70.21%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 282
            I +  EGRW  L KR+GL R GKSCRLRW+NYL+P VKRG +T  E+  IL LH   GNRWS IA  +PGRTDNEIKNYW T ++K+     ID
Sbjct:   40 IKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGID 133          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.854e-27
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            I RH  G W  L K++GL R GKSCRLRW+NYL+PD+KRGN + +E+ +I+ LH   GNRWS IA  LPGRTDNEIKN W T ++K+
Sbjct:   29 IQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKR 115          
The following BLAST results are available for this feature:
BLAST of CX308963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
MYB12_ARATH3.371e-2860.92Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
GAM1_ORYSJ4.403e-2856.18Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GAM1_ORYSI4.403e-2856.18Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
MYBP_MAIZE7.511e-2860.92Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MYB82_ARATH9.809e-2859.77Transcription factor MYB82 OS=Arabidopsis thaliana... [more]
MYB4_ARATH9.809e-2857.73Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB23_ARATH9.809e-2858.62Transcription factor MYB23 OS=Arabidopsis thaliana... [more]
MYB6_ARATH2.854e-2750.00Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
MYB5_ARATH2.854e-2759.57Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYB4_ORYSJ2.854e-2759.77Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionC21006F01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308963 ID=CX308963; Name=CX308963; organism=Citrus clementina; type=EST; length=604bp
ATATCTCGGCACAGCGAAGGCCGATGGAATTTGCTAGCAAAACGTTCGGG
CTTGAAGAGAACTGGGAAAAGTTGCAGATTGAGATGGCTAAATTATCTGA
AACCTGATGTGAAGAGAGGCAATCTCACTCCACAAGAACAAATGTCAATT
CTTGAACTCCATTCTAAGTGGGGTAATAGGTGGTCGAAGATTGCTCAGCA
CTTACCAGGAAGGACTGACAATGAAATCAAGAACTATTGGAGAACTCGTG
TTCAGAAGCAAGCACGGCATCTAAAGATAGACGCAAATAGCACGACATTT
CAAGAGATTATTCGATGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGA
CACATCATCATCATCATCACCATCGGCTTTATCTCAGAATCCTACAATTA
ATTCTCAGCCGTTTGATCATGCTTTTCATCATCAGGGATCAGCATCGGCA
CAAATAATATCCCATCAAGTTCCTTACGATCGGGGAGTGATTGATCATCA
AGAATTGAATTCATCATCAGACTCGGAGCACGGCATTGGCACCAGCACTT
CCTGCATTTCTTCATCCGAATCAATGAATTTTTCCCAAGTGTCTCAGTTT
TCGG
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