CX308963

Overview
NameCX308963
Unique NameCX308963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX308963_ssr353 microsatellite CX308963_ssr353:353..367. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11238 contig Ccv1_Contig11238:419..1022. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.854e-27
Identity = 55/94 (58.51%), Postives = 68/94 (72.34%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 282
            I  H EG W  L + +GL+R GKSCRLRW+NYL+PD+KRGN T +E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T V+++     ID
Sbjct:   29 IKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGID 122          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.728e-27
Identity = 56/104 (53.85%), Postives = 76/104 (73.08%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTTFQEII 312
            I+RH  G W+ + K +GL+R GKSCRLRW+NYL+PD+KRG  +  E+  I+ELH+  GNRWS+IA  LPGRTDNEIKN+W + ++K+ R   ID   TT + +I
Sbjct:   29 ITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKGID--PTTHKPLI 130          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.728e-27
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 282
            I+ +  G W  L K +GL R GKSCRLRW+NYL+PD++RG  +  E+ +I+ LH+  GN+WSKIA HLPGRTDNEIKNYW T ++K+   + ID
Sbjct:   30 INENGYGNWRSLPKLAGLNRCGKSCRLRWMNYLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQMGID 123          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.728e-27
Identity = 55/94 (58.51%), Postives = 67/94 (71.28%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 282
            I  H EG W  L K +GL R GKSCRLRW+NYL+PD+KRGN T +E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T ++++     ID
Sbjct:   29 IRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGID 122          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.304e-27
Identity = 56/94 (59.57%), Postives = 66/94 (70.21%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 282
            I  H EG W  L K +GL R GKSCRLRW+NYL+PD+KRGN T  E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T V+++     ID
Sbjct:   29 IRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKLLGRGID 122          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.304e-27
Identity = 55/94 (58.51%), Postives = 67/94 (71.28%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 282
            I  H EG W  L K +GL R GKSCRLRW+NYL+PD+KRGN T +E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T ++++     ID
Sbjct:   29 IRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKLVSRGID 122          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.304e-27
Identity = 54/94 (57.45%), Postives = 67/94 (71.28%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 282
            I  H EG W  L K +GL R GKSCRLRW+NYL+PD+KRGN + +E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T ++++     ID
Sbjct:   29 IKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTSRGID 122          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.416e-26
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            I +H    W  L K++GL R GKSCRLRW+NYL+PD+KRGN T +E+ +I+ LH   GN+WSKIA  LPGRTDNEIKN W T ++K+
Sbjct:   31 IQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKK 117          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: GL1_ARATH (Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.416e-26
Identity = 48/87 (55.17%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            +  H  G+WN + +++GLKR GKSCRLRW+NYL P+V +GN T QE+  I+ LH   GNRWS IA+ +PGRTDN++KNYW T + K+
Sbjct:   31 VLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 117          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: GL1_ARALY (Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.416e-26
Identity = 48/87 (55.17%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            +  H  G+WN + +++GLKR GKSCRLRW+NYL P+V +GN T QE+  I+ LH   GNRWS IA+ +PGRTDN++KNYW T + K+
Sbjct:   31 VLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 117          
The following BLAST results are available for this feature:
BLAST of CX308963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
MYB32_ARATH2.854e-2758.51Transcription factor MYB32 OS=Arabidopsis thaliana... [more]
MYB86_ARATH3.728e-2753.85Transcription factor MYB86 OS=Arabidopsis thaliana... [more]
MYB39_ARATH3.728e-2755.32Transcription factor MYB39 OS=Arabidopsis thaliana... [more]
MYB08_ANTMA3.728e-2758.51Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
MYB38_MAIZE8.304e-2759.57Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]
MYB30_ANTMA8.304e-2758.51Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB1_HORVU8.304e-2757.45Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYB1_MAIZE2.416e-2658.62Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
GL1_ARATH2.416e-2655.17Trichome differentiation protein GL1 OS=Arabidopsi... [more]
GL1_ARALY2.416e-2655.17Trichome differentiation protein GL1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC21006F01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308963 ID=CX308963; Name=CX308963; organism=Citrus clementina; type=EST; length=604bp
ATATCTCGGCACAGCGAAGGCCGATGGAATTTGCTAGCAAAACGTTCGGG
CTTGAAGAGAACTGGGAAAAGTTGCAGATTGAGATGGCTAAATTATCTGA
AACCTGATGTGAAGAGAGGCAATCTCACTCCACAAGAACAAATGTCAATT
CTTGAACTCCATTCTAAGTGGGGTAATAGGTGGTCGAAGATTGCTCAGCA
CTTACCAGGAAGGACTGACAATGAAATCAAGAACTATTGGAGAACTCGTG
TTCAGAAGCAAGCACGGCATCTAAAGATAGACGCAAATAGCACGACATTT
CAAGAGATTATTCGATGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGA
CACATCATCATCATCATCACCATCGGCTTTATCTCAGAATCCTACAATTA
ATTCTCAGCCGTTTGATCATGCTTTTCATCATCAGGGATCAGCATCGGCA
CAAATAATATCCCATCAAGTTCCTTACGATCGGGGAGTGATTGATCATCA
AGAATTGAATTCATCATCAGACTCGGAGCACGGCATTGGCACCAGCACTT
CCTGCATTTCTTCATCCGAATCAATGAATTTTTCCCAAGTGTCTCAGTTT
TCGG
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