CX308963

Overview
NameCX308963
Unique NameCX308963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX308963_ssr353 microsatellite CX308963_ssr353:353..367. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11238 contig Ccv1_Contig11238:419..1022. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.275e-23
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDAN 288
            I  H  G W  +   +GL R  KSCRLRW NYL+P +KRG+ T  E+  I+ L +  GNRW+ IA +LP RTDN+IKNYW T ++K+   L+   N
Sbjct:   29 IQEHGPGNWRAIPSNTGLLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEKLQSPEN 124          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.241e-22
Identity = 46/92 (50.00%), Postives = 65/92 (70.65%), Query Frame = 1
Query:   19 GRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANST 294
            G W     ++GL+R GKSCRLRWLNYL+P++K G+ + +E   I  L +  G+RWS IA HLPGRTDN+IKNYW T+++K+      D++S+
Sbjct:   36 GNWISFPLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKLLSSSSDSSSS 127          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.764e-22
Identity = 46/81 (56.79%), Postives = 60/81 (74.07%), Query Frame = 1
Query:   19 GRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            G W  L ++ GLKR GKSCRLRWLNYL+P++K G  + +E+  I  L+   G+RWS IA  LPGRTDN+IKNYW TR++K+
Sbjct:   36 GNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: LAF1_ARATH (Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.764e-22
Identity = 43/79 (54.43%), Postives = 62/79 (78.48%), Query Frame = 1
Query:   25 WNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            W  +  ++GL+R GKSCRLRW+NYL+P +KR  ++ +E+ +IL  HS  GN+WS+IA+ LPGRTDNEIKNYW + ++K+
Sbjct:   35 WTTVPIKAGLQRNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKK 113          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.158e-22
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 1
Query:   19 GRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            G W  L  ++GL+R GKSCRLRWLNYL+P+++ G+ T +E   I  L +  G+RWS IA HL GRTDN+IKNYW T+++K+
Sbjct:   36 GNWIALPHKAGLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKK 116          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MY104_ARATH (Transcription factor MYB104 OS=Arabidopsis thaliana GN=MYB104 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 9.832e-20
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTR 249
            + ++ +  W  + KR+GL     SCR RW+N+LKP +K+G  T +E+  +L+LH+  GN+WS++A+  PGRTDNEIKN+W  R
Sbjct:   33 VIQYGDRTWTHVPKRTGLPHNPASCRFRWMNHLKPSLKKGPFTDEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKNFWNAR 115          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB_HUMAN (Myb proto-oncogene protein OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.395e-18
Identity = 54/163 (33.13%), Postives = 90/163 (55.21%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK---QARHLKIDANSTTFQEIIRCFWMPRLLQKMDTXXXXXXXXXXQNPTINSQPFDHAFHHQGSASAQIISHQVPY 477
            + ++   RW+++AK   LK R GK CR RW N+L P+VK+ + T +E   I + H + GNRW++IA+ LPGRTDN IKN+W + +++   Q  +L+ +++  +   +   F     L                 PT+N+   D++++H   + AQ +S  VPY
Sbjct:  107 VQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQ-ESSKASQPAVATSFQKNSHLMGFAQAPPTAQLPATGQPTVNN---DYSYYH--ISEAQNVSSHVPY 261          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB_XENLA (Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.203e-18
Identity = 54/152 (35.53%), Postives = 86/152 (56.58%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRT---RVQKQARHLKIDANSTTFQEIIRCFWMPRLLQKMDTXXXXXXXXXXQNPTINSQPFDHAFHHQGSA 444
            + ++   RW+++AK   LK R GK CR RW N+L P+VK+ + T +E  +I E H + GNRW++IA+ LPGRTDN IKN+W +   R ++Q  +L+ +++ T    I+  F  P+    M T             + +S P+ H   HQ ++
Sbjct:  104 VHKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKEEQEGYLQ-NSSKTNQHTIVTNF--PKSNHLM-TFTHTRASAEHSQASTSSFPYYHIAEHQNAS 249          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB_BOVIN (Myb proto-oncogene protein OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.202e-17
Identity = 54/163 (33.13%), Postives = 89/163 (54.60%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK---QARHLKIDANSTTFQEIIRCFWMPRLLQKMDTXXXXXXXXXXQNPTINSQPFDHAFHHQGSASAQIISHQVPY 477
            + ++   RW+++AK   LK R GK CR RW N+L P+VK+ + T +E   I + H + GNRW++IA+ LPGRTDN IKN+W + +++   Q  +L+ +++  +   +   F     L                 P++NS   D+ ++H   + AQ +S  VPY
Sbjct:  107 VQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQ-ESSKASQPAVTTSFQKNSHLMGFTHAPPSAQLPPAGQPSVNS---DYPYYH--ISEAQNVSSHVPY 261          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.202e-17
Identity = 41/88 (46.59%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            + ++   RW+L+AK   LK R GK CR RW N+L P+VK+ + T +E   I E H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct:  102 VQKYGPKRWSLIAKH--LKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187          
The following BLAST results are available for this feature:
BLAST of CX308963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
MYB06_ANTMA7.275e-2347.92Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
RAX1_ARATH1.241e-2250.00Transcription factor RAX1 OS=Arabidopsis thaliana ... [more]
RAX3_ARATH2.764e-2256.79Transcription factor RAX3 OS=Arabidopsis thaliana ... [more]
LAF1_ARATH2.764e-2254.43Transcription factor LAF1 OS=Arabidopsis thaliana ... [more]
RAX2_ARATH6.158e-2254.32Transcription factor RAX2 OS=Arabidopsis thaliana ... [more]
MY104_ARATH9.832e-2045.78Transcription factor MYB104 OS=Arabidopsis thalian... [more]
MYB_HUMAN5.395e-1833.13Myb proto-oncogene protein OS=Homo sapiens GN=MYB ... [more]
MYB_XENLA9.203e-1835.53Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1[more]
MYB_BOVIN1.202e-1733.13Myb proto-oncogene protein OS=Bos taurus GN=MYB PE... [more]
MYBA_MOUSE1.202e-1746.59Myb-related protein A OS=Mus musculus GN=Mybl1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC21006F01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308963 ID=CX308963; Name=CX308963; organism=Citrus clementina; type=EST; length=604bp
ATATCTCGGCACAGCGAAGGCCGATGGAATTTGCTAGCAAAACGTTCGGG
CTTGAAGAGAACTGGGAAAAGTTGCAGATTGAGATGGCTAAATTATCTGA
AACCTGATGTGAAGAGAGGCAATCTCACTCCACAAGAACAAATGTCAATT
CTTGAACTCCATTCTAAGTGGGGTAATAGGTGGTCGAAGATTGCTCAGCA
CTTACCAGGAAGGACTGACAATGAAATCAAGAACTATTGGAGAACTCGTG
TTCAGAAGCAAGCACGGCATCTAAAGATAGACGCAAATAGCACGACATTT
CAAGAGATTATTCGATGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGA
CACATCATCATCATCATCACCATCGGCTTTATCTCAGAATCCTACAATTA
ATTCTCAGCCGTTTGATCATGCTTTTCATCATCAGGGATCAGCATCGGCA
CAAATAATATCCCATCAAGTTCCTTACGATCGGGGAGTGATTGATCATCA
AGAATTGAATTCATCATCAGACTCGGAGCACGGCATTGGCACCAGCACTT
CCTGCATTTCTTCATCCGAATCAATGAATTTTTCCCAAGTGTCTCAGTTT
TCGG
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