CX308963

Overview
NameCX308963
Unique NameCX308963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX308963_ssr353 microsatellite CX308963_ssr353:353..367. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11238 contig Ccv1_Contig11238:419..1022. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB_AVIMB (Transforming protein Myb OS=Avian myeloblastosis virus GN=V-MYB PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.595e-16
Identity = 38/88 (43.18%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            + ++   RW+ +AK   LK R GK CR RW N+L P+VK+ + T +E   I + H + GNRW++IA+ LPGRTDN +KN+W + ++++
Sbjct:   36 VQKYGPKRWSDIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 121          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSG--LKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLK 276
            + ++    W+L+++R    L R  KSC  RW NYL+P +K+G+LT  EQ  ++ L +K GN+W KIA  +PGRT   +  +W    +KQ R L+
Sbjct:   24 VRQYGPREWSLVSQRMNRPLHRDAKSCLERWKNYLRPGIKKGSLTDDEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRELR 117          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   25 WNLLAKRSG--LKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLK 276
            W+L+++R    L R  KSC  RW NYLKP +K+G+LT +EQ  ++ L  K GN+W KIA  +PGRT   +  +W    +KQ R  K
Sbjct:   27 WHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREEK 112          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYBAA_DICDI (Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.583e-15
Identity = 38/97 (39.18%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS 291
            +  H   RW  +A    L R G+ CR RW N L P +KR   T +E   IL+ HSK+GN+W++I++ LPGRT+  IKN+W + ++++    + D +S
Sbjct:  772 VDLHGTKRWKYIASLLCL-RNGRQCRERWSNQLDPSIKRDAWTLEEDRIILDAHSKYGNKWAEISKLLPGRTNCAIKNHWNSTMKRKLSKKQYDFSS 867          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB_DROME (Myb protein OS=Drosophila melanogaster GN=Myb PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.244e-14
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   22 RWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            +W L+A+     R GK CR RW N+L P++K+   T +E   I + H + GN+W+KIA+ LPGRTDN IKN+W + ++++
Sbjct:  158 KWTLIARYLN-GRIGKQCRERWHNHLNPNIKKTAWTEKEDEIIYQAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRK 236          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB98_ARATH (Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.244e-14
Identity = 31/68 (45.59%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   58 RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            R GK CR RW N+L+PD+K+   + +E   ++E H + GN+W++IA+ LPGRT+N IKN+W    ++Q
Sbjct:  250 RIGKQCRERWHNHLRPDIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 317          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MB3R1_ARATH (Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.173e-14
Identity = 29/87 (33.33%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            + ++   +W+ +++     R GK CR RW N+L P + +   T +E+++++  H  +GN+W+++ + LPGR+DN IKN+W + V+K+
Sbjct:  102 VEKYGPKKWSTISQHLP-GRIGKQCRERWHNHLNPGINKNAWTQEEELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNHWNSSVKKK 187          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 33/87 (37.93%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    1 ISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            + ++    W +++K S   R+GKSCRLRW N L P V+    + +E  +I   H+++GN+W+ IA+ L GRTDN +KN+W + ++++
Sbjct:   21 VVKYGPRNWTVISK-SIPGRSGKSCRLRWCNQLSPQVEHRPFSAEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYBA_DICDI (Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=4 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.346e-13
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   58 RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRT---RVQKQARHLKIDA 285
            R GK CR RW N+L P++K+   + +E   I + H+  GN+W++IA+ LPGRTDN IKN+W +   RV     HLK  A
Sbjct:  234 RMGKQCRERWHNHLNPNIKKEAWSDEEDQIIRDQHAIHGNKWAEIAKFLPGRTDNAIKNHWNSSMKRVSNNNVHLKSHA 312          
BLAST of CX308963 vs. ExPASy Swiss-Prot
Match: MYBQ_DICDI (Myb-like protein Q OS=Dictyostelium discoideum GN=mybQ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.226e-13
Identity = 30/68 (44.12%), Postives = 46/68 (67.65%), Query Frame = 1
Query:   58 RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 261
            R GK CR RW N+L P+V++ N TP+E   I++ H+  GN+W+ I++ L GR  N IKN+W + + K+
Sbjct:  310 RIGKQCRERWFNHLSPEVRKTNWTPEEDKIIIDAHASLGNKWTAISKMLDGRPANAIKNHWNSTLLKK 377          
The following BLAST results are available for this feature:
BLAST of CX308963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
MYB_AVIMB6.595e-1643.18Transforming protein Myb OS=Avian myeloblastosis v... [more]
RS2_ORYSJ8.613e-1639.36Protein rough sheath 2 homolog OS=Oryza sativa sub... [more]
AS1_ARATH1.125e-1544.19Transcription factor AS1 OS=Arabidopsis thaliana G... [more]
MYBAA_DICDI5.583e-1539.18Myb-like protein AA OS=Dictyostelium discoideum GN... [more]
MYB_DROME1.244e-1443.75Myb protein OS=Drosophila melanogaster GN=Myb PE=1... [more]
MYB98_ARATH1.244e-1445.59Transcription factor MYB98 OS=Arabidopsis thaliana... [more]
MB3R1_ARATH6.173e-1433.33Myb-related protein 3R-1 OS=Arabidopsis thaliana G... [more]
MYB44_ARATH1.053e-1337.93Transcription factor MYB44 OS=Arabidopsis thaliana... [more]
MYBA_DICDI2.346e-1345.57Myb-like protein A OS=Dictyostelium discoideum GN=... [more]
MYBQ_DICDI5.226e-1344.12Myb-like protein Q OS=Dictyostelium discoideum GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21006F01Rv AbsLeaSub1 Citrus clementina cDNA clone C21006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308963 ID=CX308963; Name=CX308963; organism=Citrus clementina; type=EST; length=604bp
ATATCTCGGCACAGCGAAGGCCGATGGAATTTGCTAGCAAAACGTTCGGG
CTTGAAGAGAACTGGGAAAAGTTGCAGATTGAGATGGCTAAATTATCTGA
AACCTGATGTGAAGAGAGGCAATCTCACTCCACAAGAACAAATGTCAATT
CTTGAACTCCATTCTAAGTGGGGTAATAGGTGGTCGAAGATTGCTCAGCA
CTTACCAGGAAGGACTGACAATGAAATCAAGAACTATTGGAGAACTCGTG
TTCAGAAGCAAGCACGGCATCTAAAGATAGACGCAAATAGCACGACATTT
CAAGAGATTATTCGATGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGA
CACATCATCATCATCATCACCATCGGCTTTATCTCAGAATCCTACAATTA
ATTCTCAGCCGTTTGATCATGCTTTTCATCATCAGGGATCAGCATCGGCA
CAAATAATATCCCATCAAGTTCCTTACGATCGGGGAGTGATTGATCATCA
AGAATTGAATTCATCATCAGACTCGGAGCACGGCATTGGCACCAGCACTT
CCTGCATTTCTTCATCCGAATCAATGAATTTTTCCCAAGTGTCTCAGTTT
TCGG
back to top