CX308988

Overview
NameCX308988
Unique NameCX308988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12468 contig Ccv1_Contig12468:313..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_THEEB (Chorismate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=aroC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.778e-28
Identity = 56/78 (71.79%), Postives = 66/78 (84.62%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FRVTTFGESHGGGVG ++DGCPPR+ LSE D+Q +LDRRRPGQSR+TTPR+E+D C+I SGV EG T GTPI +
Sbjct:    5 FGHLFRVTTFGESHGGGVGVVVDGCPPRLELSEVDIQKELDRRRPGQSRLTTPRQESDRCEILSGVFEGKTLGTPIAI 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ACAM1 (Chorismate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=aroC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.961e-28
Identity = 55/78 (70.51%), Postives = 66/78 (84.62%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FR+TTFGESHGGGVG +IDGCPP+I ++  D+Q +LDRRRPGQSRITTPRKETDTC+I SG+ +G T GTPI +
Sbjct:    5 FGHLFRITTFGESHGGGVGVVIDGCPPQIEIAAEDIQFELDRRRPGQSRITTPRKETDTCEIVSGMFQGKTLGTPITI 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CYAP7 (Chorismate synthase OS=Cyanothece sp. (strain PCC 7424) GN=aroC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.173e-28
Identity = 55/78 (70.51%), Postives = 67/78 (85.90%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FR+TTFGESHGGGVG +IDGCPPRI +SE ++Q++LDRRRPGQS+ITTPR+E+DTC+I SGV EG T GT I +
Sbjct:    5 FGHLFRITTFGESHGGGVGVVIDGCPPRIEISETEIQLELDRRRPGQSKITTPRQESDTCEIISGVFEGKTLGTSIAI 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SYNP2 (Chorismate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=aroC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.757e-28
Identity = 54/78 (69.23%), Postives = 65/78 (83.33%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FR+TT+GESHGGGVG +IDGCPP + +SEA++Q +LDRRRPGQSRITTPR E D C+I SGV +G TTGTPI +
Sbjct:    5 FGHLFRITTYGESHGGGVGVVIDGCPPLVEISEAEIQAELDRRRPGQSRITTPRNEADRCEIMSGVFDGKTTGTPISI 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SYNE7 (Chorismate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=aroC PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.824e-28
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FR++TFGESHGGGVG +IDGCPPR+ +SEA++Q +LDRRRPGQS+ITTPRKE D C+I SGV +G T GTPI +
Sbjct:    5 FGHLFRISTFGESHGGGVGVVIDGCPPRLEISEAEIQFELDRRRPGQSKITTPRKEADQCEILSGVVDGKTLGTPIAI 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_TRIEI (Chorismate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=aroC PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.153e-27
Identity = 55/79 (69.62%), Postives = 67/79 (84.81%), Query Frame = -1
Query:    1 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVF 237
            FG  FRVTTFGESHGGGVG IIDGCPP++ ++  ++Q +LDRRRPGQS+ITTPRKE+DTC+I SGV EG T GTPI ++
Sbjct:    5 FGHLFRVTTFGESHGGGVGVIIDGCPPKLEINVKEIQYELDRRRPGQSKITTPRKESDTCEILSGVFEGQTLGTPIMIW 83          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_NOSP7 (Chorismate synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=aroC PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.153e-27
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FR++TFGESHGGGVG +IDGCPP++ +S  ++QV+LDRRRPGQS+ITTPRKE DTC+I SGV EG T GTPI +
Sbjct:    5 FGHLFRISTFGESHGGGVGVVIDGCPPQLEISAEEIQVELDRRRPGQSKITTPRKEADTCEIISGVFEGKTLGTPITI 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ANAVT (Chorismate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=aroC PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.505e-27
Identity = 54/78 (69.23%), Postives = 65/78 (83.33%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FR+TTFGESHGGGVG +IDGCPP + +S  ++Q++LDRRRPGQS+ITTPRKE DTC+I SGV EG T GTPI +
Sbjct:    5 FGHLFRITTFGESHGGGVGVVIDGCPPLLEISPEEIQLELDRRRPGQSKITTPRKEADTCEILSGVYEGKTLGTPISI 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ANASP (Chorismate synthase OS=Anabaena sp. (strain PCC 7120) GN=aroC PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.505e-27
Identity = 54/78 (69.23%), Postives = 65/78 (83.33%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FR+TTFGESHGGGVG +IDGCPP + +S  ++Q++LDRRRPGQS+ITTPRKE DTC+I SGV EG T GTPI +
Sbjct:    5 FGHLFRITTFGESHGGGVGVVIDGCPPLLEISPEEIQLELDRRRPGQSKITTPRKEADTCEILSGVYEGKTLGTPISI 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_MICAN (Chorismate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=aroC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.380e-27
Identity = 52/78 (66.67%), Postives = 65/78 (83.33%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FRV+TFGESHGGGVG +IDGCPPR+ +S+ ++Q+DLDRR+PGQSRI TPR+E D C+I SGV +G T GTPI +
Sbjct:    5 FGRLFRVSTFGESHGGGVGVVIDGCPPRLEISQEEIQIDLDRRKPGQSRIVTPRRENDICEIISGVFDGKTLGTPIAI 82          
The following BLAST results are available for this feature:
BLAST of CX308988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_THEEB1.778e-2871.79Chorismate synthase OS=Thermosynechococcus elongat... [more]
AROC_ACAM13.961e-2870.51Chorismate synthase OS=Acaryochloris marina (strai... [more]
AROC_CYAP75.173e-2870.51Chorismate synthase OS=Cyanothece sp. (strain PCC ... [more]
AROC_SYNP26.757e-2869.23Chorismate synthase OS=Synechococcus sp. (strain A... [more]
AROC_SYNE78.824e-2869.23Chorismate synthase OS=Synechococcus elongatus (st... [more]
AROC_TRIEI1.153e-2769.62Chorismate synthase OS=Trichodesmium erythraeum (s... [more]
AROC_NOSP71.153e-2769.23Chorismate synthase OS=Nostoc punctiforme (strain ... [more]
AROC_ANAVT1.505e-2769.23Chorismate synthase OS=Anabaena variabilis (strain... [more]
AROC_ANASP1.505e-2769.23Chorismate synthase OS=Anabaena sp. (strain PCC 71... [more]
AROC_MICAN4.380e-2766.67Chorismate synthase OS=Microcystis aeruginosa (str... [more]

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Properties
Property NameValue
Genbank descriptionC21007A08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308988 ID=CX308988; Name=CX308988; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
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