CX308988

Overview
NameCX308988
Unique NameCX308988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12468 contig Ccv1_Contig12468:313..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_METCA (Chorismate synthase OS=Methylococcus capsulatus GN=aroC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.099e-25
Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  F VTTFGESHG  +GCI+DGCPP + LSEAD+Q DL RRRPGQSR TT R+E+DT KI SGV EG+TTGTPI
Sbjct:    7 GKLFTVTTFGESHGPALGCIVDGCPPGLALSEADLQHDLYRRRPGQSRHTTQRRESDTVKILSGVFEGLTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_HERAR (Chorismate synthase OS=Herminiimonas arsenicoxydans GN=aroC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.099e-25
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FGT F VTTFGESHG  +GC+IDGCPP + LSEAD+Q DLDRR+PG SR  T R+E+DT +I SGV EG TTGTPI
Sbjct:    6 FGTLFTVTTFGESHGPAIGCVIDGCPPGMVLSEADIQFDLDRRKPGTSRHVTQRQESDTVEILSGVFEGKTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_GLUOX (Chorismate synthase OS=Gluconobacter oxydans GN=aroC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.354e-25
Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  FRVTT+GESHG  +GC+IDGCPPR+ LSE D+Q  LDRRRPGQSR TT R+E D  +I SGV EG TTGTPI
Sbjct:    6 FGKLFRVTTWGESHGPAIGCVIDGCPPRLKLSEEDIQPWLDRRRPGQSRFTTQRREPDQVRILSGVFEGQTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_VIBCM (Chorismate synthase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=aroC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.992e-25
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCI+DGCPP + +SEAD+QVDLDRRRPG SR TT R+E D  KI SGV EG TTGT I
Sbjct:    7 GQHFRVTTFGESHGIALGCIVDGCPPGLTISEADLQVDLDRRRPGTSRYTTQRREPDEVKILSGVFEGKTTGTSI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_VIBCH (Chorismate synthase OS=Vibrio cholerae GN=aroC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.992e-25
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCI+DGCPP + +SEAD+QVDLDRRRPG SR TT R+E D  KI SGV EG TTGT I
Sbjct:    7 GQHFRVTTFGESHGIALGCIVDGCPPGLTISEADLQVDLDRRRPGTSRYTTQRREPDEVKILSGVFEGKTTGTSI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_VIBC3 (Chorismate synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=aroC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.992e-25
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCI+DGCPP + +SEAD+QVDLDRRRPG SR TT R+E D  KI SGV EG TTGT I
Sbjct:    7 GQHFRVTTFGESHGIALGCIVDGCPPGLTISEADLQVDLDRRRPGTSRYTTQRREPDEVKILSGVFEGKTTGTSI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_UNCMA (Chorismate synthase OS=Uncultured methanogenic archaeon RC-I GN=aroC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.992e-25
Identity = 50/76 (65.79%), Postives = 62/76 (81.58%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  FR+TTFGESHG G+G +IDGCP  +PL+EAD+Q +LD+R+PGQS +TT RKE D  +I SGV EG+TTGTPI
Sbjct:    6 FGNAFRITTFGESHGPGLGVVIDGCPAGLPLTEADVQAELDKRKPGQSEVTTQRKEADMVEILSGVFEGLTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_NEIMF (Chorismate synthase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=aroC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.992e-25
Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F VTTFGESHG G+GCIIDGCPP + LSEAD+Q DLDRR+PG SR  T R+ETD  +I SGV +G TTGTPI
Sbjct:    6 FGQLFTVTTFGESHGAGLGCIIDGCPPGLELSEADIQFDLDRRKPGTSRHVTQRRETDQVEILSGVFKGKTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_NEIM0 (Chorismate synthase OS=Neisseria meningitidis serogroup C (strain 053442) GN=aroC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.992e-25
Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F VTTFGESHG G+GCIIDGCPP + LSEAD+Q DLDRR+PG SR  T R+ETD  +I SGV +G TTGTPI
Sbjct:    6 FGQLFTVTTFGESHGAGLGCIIDGCPPGLELSEADIQFDLDRRKPGTSRHVTQRRETDQVEILSGVFKGKTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_VEREI (Chorismate synthase OS=Verminephrobacter eiseniae (strain EF01-2) GN=aroC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.132e-25
Identity = 51/76 (67.11%), Postives = 58/76 (76.32%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FGT F VT FGESHG  +GC+IDGCPP +PLSEAD+Q DLDRRRPG SR  T R E D  +I SG+ +G TTGTPI
Sbjct:    6 FGTLFAVTNFGESHGPAIGCVIDGCPPGMPLSEADIQTDLDRRRPGSSRHVTQRNEPDAVEILSGIYQGQTTGTPI 81          
The following BLAST results are available for this feature:
BLAST of CX308988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_METCA4.099e-2572.00Chorismate synthase OS=Methylococcus capsulatus GN... [more]
AROC_HERAR4.099e-2569.74Chorismate synthase OS=Herminiimonas arsenicoxydan... [more]
AROC_GLUOX5.354e-2569.74Chorismate synthase OS=Gluconobacter oxydans GN=ar... [more]
AROC_VIBCM6.992e-2570.67Chorismate synthase OS=Vibrio cholerae serotype O1... [more]
AROC_VIBCH6.992e-2570.67Chorismate synthase OS=Vibrio cholerae GN=aroC PE=... [more]
AROC_VIBC36.992e-2570.67Chorismate synthase OS=Vibrio cholerae serotype O1... [more]
AROC_UNCMA6.992e-2565.79Chorismate synthase OS=Uncultured methanogenic arc... [more]
AROC_NEIMF6.992e-2569.74Chorismate synthase OS=Neisseria meningitidis sero... [more]
AROC_NEIM06.992e-2569.74Chorismate synthase OS=Neisseria meningitidis sero... [more]
AROC_VEREI9.132e-2567.11Chorismate synthase OS=Verminephrobacter eiseniae ... [more]

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Properties
Property NameValue
Genbank descriptionC21007A08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308988 ID=CX308988; Name=CX308988; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
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