CX308988

Overview
NameCX308988
Unique NameCX308988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_BART1 (Chorismate synthase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=aroC PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.179e-18
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGV------SEGVTTGTPI 237
            FG  FRVTT+GESHG  +GC+IDGCPP I  + A++Q  LD+RRPGQS+ TT R+E D  ++ SG       +  VTTGTPI
Sbjct:    6 FGHLFRVTTWGESHGAALGCVIDGCPPGIIFTLAEIQAYLDKRRPGQSKYTTQRQEQDQVELLSGAITQEDGTTFVTTGTPI 87          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_BARBK (Chorismate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=aroC PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.179e-18
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = -1
Query:    1 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGV---SEG---VTTGTPIHVF 237
            FG  FRVTT+GESHG  +GC+IDGCPP I  +  ++Q  L++RRPG S  TT R+E D  +I SGV   ++G   VTTGTPI +F
Sbjct:    6 FGHLFRVTTWGESHGAALGCVIDGCPPGIAFTLTEIQAYLNKRRPGHSEYTTQRRELDQVEILSGVVSQNDGKALVTTGTPISMF 90          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_RHOSK (Chorismate synthase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=aroC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.845e-18
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FRVTT+GESHG  +G  +DGCPP + +    +Q  LDRR+PGQ+R TT R+E D  +I SG  EG +TGTPI +
Sbjct:    6 FGHIFRVTTWGESHGPALGATVDGCPPGVAIEAEAIQHWLDRRKPGQNRFTTQRQEPDAVRILSGTFEGRSTGTPIQL 83          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_RHOS4 (Chorismate synthase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=aroC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.845e-18
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FRVTT+GESHG  +G  +DGCPP + +    +Q  LDRR+PGQ+R TT R+E D  +I SG  EG +TGTPI +
Sbjct:    6 FGHIFRVTTWGESHGPALGATVDGCPPGVAIEAEAIQHWLDRRKPGQNRFTTQRQEPDAVRILSGTFEGRSTGTPIQL 83          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_RHOS1 (Chorismate synthase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=aroC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.845e-18
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FRVTT+GESHG  +G  +DGCPP + +    +Q  LDRR+PGQ+R TT R+E D  +I SG  EG +TGTPI +
Sbjct:    6 FGHIFRVTTWGESHGPALGATVDGCPPGVAIEAEAIQHWLDRRKPGQNRFTTQRQEPDAVRILSGTFEGRSTGTPIQL 83          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_RHIEC (Chorismate synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=aroC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.845e-18
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGV---SEGVT---TGTPI 237
            FG  FRVTT+GESHG  +GC++DGCPP +     D+QV LD+R+PGQSR  T R+E D  K+ SGV   ++G T   TGTPI
Sbjct:    6 FGHLFRVTTWGESHGPALGCVVDGCPPGLRFKLEDLQVWLDKRKPGQSRFVTQRREDDLVKVLSGVMLDADGETMTSTGTPI 87          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_RHIE6 (Chorismate synthase OS=Rhizobium etli (strain CIAT 652) GN=aroC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.845e-18
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGV---SEGVT---TGTPI 237
            FG  FRVTT+GESHG  +GC++DGCPP +     D+QV LD+R+PGQSR  T R+E D  K+ SGV   ++G T   TGTPI
Sbjct:    6 FGHLFRVTTWGESHGPALGCVVDGCPPGLRFKLEDLQVWLDKRKPGQSRFVTQRREDDLVKVLSGVMLDADGETMTSTGTPI 87          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PSEU5 (Chorismate synthase OS=Pseudomonas stutzeri (strain A1501) GN=aroC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.845e-18
Identity = 45/76 (59.21%), Postives = 53/76 (69.74%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            +G  F VTT GESHG  +  I+DGCPP + LS  D+Q DLDRR+PG SR TT R+E D  +I SGV EG TTG PI
Sbjct:    6 YGKLFTVTTAGESHGPALVAIVDGCPPGLELSLDDLQRDLDRRKPGTSRHTTQRQEADEVEILSGVFEGRTTGCPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_IGNH4 (Chorismate synthase OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=aroC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.845e-18
Identity = 44/77 (57.14%), Postives = 54/77 (70.13%), Query Frame = -1
Query:    4 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 234
            G  F VTT+GESHG  +G +IDGCP  +PLSE D+ V+L  RRPG+ R TTPR+E D  +I SGV  G TTG PI +
Sbjct:    7 GKMFSVTTWGESHGKAIGAVIDGCPAGLPLSEEDLLVELSLRRPGR-RFTTPRREPDVPEILSGVFNGKTTGMPISI 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CAMLR (Chorismate synthase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=aroC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.845e-18
Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  F+ T+FGESHG  +GC+IDG P  +      +Q  LD+R+PGQ++ +TPRKE D  ++ SGV EG TTGTPI V
Sbjct:    4 FGIRFKFTSFGESHGQAIGCVIDGMPAGVKFDFDFLQEMLDKRKPGQNKFSTPRKEEDKAQVLSGVFEGYTTGTPISV 81          
The following BLAST results are available for this feature:
BLAST of CX308988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_BART12.179e-1854.88Chorismate synthase OS=Bartonella tribocorum (stra... [more]
AROC_BARBK2.179e-1854.12Chorismate synthase OS=Bartonella bacilliformis (s... [more]
AROC_RHOSK2.845e-1853.85Chorismate synthase OS=Rhodobacter sphaeroides (st... [more]
AROC_RHOS42.845e-1853.85Chorismate synthase OS=Rhodobacter sphaeroides (st... [more]
AROC_RHOS12.845e-1853.85Chorismate synthase OS=Rhodobacter sphaeroides (st... [more]
AROC_RHIEC2.845e-1854.88Chorismate synthase OS=Rhizobium etli (strain CFN ... [more]
AROC_RHIE62.845e-1854.88Chorismate synthase OS=Rhizobium etli (strain CIAT... [more]
AROC_PSEU52.845e-1859.21Chorismate synthase OS=Pseudomonas stutzeri (strai... [more]
AROC_IGNH42.845e-1857.14Chorismate synthase OS=Ignicoccus hospitalis (stra... [more]
AROC_CAMLR2.845e-1852.56Chorismate synthase OS=Campylobacter lari (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC21007A08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308988 ID=CX308988; Name=CX308988; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
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