CX308988

Overview
NameCX308988
Unique NameCX308988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_RHISN (Chorismate synthase OS=Rhizobium sp. (strain NGR234) GN=aroC PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.716e-18
Identity = 44/82 (53.66%), Postives = 58/82 (70.73%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGV---SEG---VTTGTPI 237
            FG  FRVTT+GESHG  +GC++DGCPP I  + A++Q  LD+R+PGQSR  T R+E D  K+ SGV    +G   ++TGTPI
Sbjct:    6 FGHLFRVTTWGESHGPALGCVVDGCPPGIRFTLAEIQAWLDKRKPGQSRFVTQRREDDLVKVLSGVMLDDDGETMISTGTPI 87          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_RHIME (Chorismate synthase OS=Rhizobium meliloti GN=aroC PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.716e-18
Identity = 44/82 (53.66%), Postives = 58/82 (70.73%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGV---SEG---VTTGTPI 237
            FG  FRVTT+GESHG  +GC++DGCPP I  + A++Q  LD+R+PGQSR  T R+E D  K+ SGV    +G   ++TGTPI
Sbjct:    6 FGHLFRVTTWGESHGPALGCVVDGCPPGIRFTLAEVQAWLDKRKPGQSRFVTQRREDDLVKVLSGVMLDDDGETMISTGTPI 87          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_BARHE (Chorismate synthase OS=Bartonella henselae GN=aroC PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.716e-18
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGV---SEG---VTTGTPI 237
            FG  FRVTT+GESHG  +GC+IDGCPP I  + +D+Q  L++R+PGQS+ TT R+E D  +I SGV    +G   VTTGTPI
Sbjct:    6 FGHLFRVTTWGESHGEALGCVIDGCPPGITFTLSDIQSYLNKRKPGQSKYTTQRRELDQVEILSGVIVQDDGITFVTTGTPI 87          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_AGRVS (Chorismate synthase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=aroC PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.853e-18
Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGV-----SEGVTTGTPI 237
            FG  FRVTT+GESHG  +G ++DGCPP +  +  D+QV LD+R+PGQSR  T R+E D  K+ SGV        +TTGTPI
Sbjct:    6 FGHLFRVTTWGESHGPALGAVVDGCPPGLKFTLEDLQVWLDKRKPGQSRFVTQRREDDLVKVLSGVMPQDDGSMITTGTPI 86          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SULMW (Chorismate synthase OS=Sulcia muelleri (strain GWSS) GN=aroC PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.339e-18
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  FRVTTFGESHG  +G IIDGCP  + L+  ++  +L+RR+PGQS I T RKE+D     SG+  G+TTGTPI
Sbjct:    6 FGKLFRVTTFGESHGYALGGIIDGCPSGLKLNFEEINNELNRRKPGQSSIVTQRKESDEVIFLSGIFNGLTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PSEMY (Chorismate synthase OS=Pseudomonas mendocina (strain ymp) GN=aroC PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.339e-18
Identity = 45/76 (59.21%), Postives = 52/76 (68.42%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            +G  F VTT GESHG  +  I+DGCPP + LS  DMQ DLDRR+PG SR TT R+E D  +I SGV EG TTG  I
Sbjct:    6 YGKLFTVTTAGESHGPALVAIVDGCPPGLELSLEDMQRDLDRRKPGTSRHTTQRQEDDVVEILSGVFEGKTTGCAI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_HELHP (Chorismate synthase OS=Helicobacter hepaticus GN=aroC PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.339e-18
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  FRV+TFGESHG G+GC+IDG P  + + E  ++  + RR PG+++ TT RKE+D  +I SGV EG++TGTPI
Sbjct:    4 FGKSFRVSTFGESHGEGIGCVIDGIPAGLHIDELFIESMMTRRAPGRNQYTTQRKESDKVQILSGVFEGLSTGTPI 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SULDN (Chorismate synthase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=aroC PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.279e-18
Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F+++TFGESHG  +GC++DG P  + + E  +Q +LDRR+PG+S   T RKE D  +I SGV EG +TGTPI
Sbjct:    4 FGIKFKISTFGESHGVAIGCLLDGVPAGLLIDEEFIQAELDRRKPGKSEFETARKEDDKVEILSGVFEGKSTGTPI 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PSYWF (Chorismate synthase OS=Psychrobacter sp. (strain PRwf-1) GN=aroC PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.279e-18
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  F+VTT GESHG G+  I+DG P  +PL+  D+Q+DLDRR+PG S+  T R+E D  +I SGV EG TTGT I
Sbjct:    7 GQAFKVTTCGESHGAGLMAIVDGVPSGLPLTSEDLQLDLDRRKPGTSKFATQRREPDEVEIISGVFEGKTTGTSI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PSEPK (Chorismate synthase OS=Pseudomonas putida (strain KT2440) GN=aroC PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.279e-18
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            +G  F VTT GESHG  +  I+DGCPP + +S AD+Q DLDRR+PG SR TT R+E D  +I SGV EG TTG  I
Sbjct:    6 YGKLFTVTTAGESHGPALVAIVDGCPPGLEISLADLQHDLDRRKPGTSRHTTQRQEADEVEILSGVFEGRTTGCSI 81          
The following BLAST results are available for this feature:
BLAST of CX308988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_RHISN3.716e-1853.66Chorismate synthase OS=Rhizobium sp. (strain NGR23... [more]
AROC_RHIME3.716e-1853.66Chorismate synthase OS=Rhizobium meliloti GN=aroC ... [more]
AROC_BARHE3.716e-1856.10Chorismate synthase OS=Bartonella henselae GN=aroC... [more]
AROC_AGRVS4.853e-1853.09Chorismate synthase OS=Agrobacterium vitis (strain... [more]
AROC_SULMW6.339e-1856.58Chorismate synthase OS=Sulcia muelleri (strain GWS... [more]
AROC_PSEMY6.339e-1859.21Chorismate synthase OS=Pseudomonas mendocina (stra... [more]
AROC_HELHP6.339e-1853.95Chorismate synthase OS=Helicobacter hepaticus GN=a... [more]
AROC_SULDN8.279e-1852.63Chorismate synthase OS=Sulfurimonas denitrificans ... [more]
AROC_PSYWF8.279e-1856.00Chorismate synthase OS=Psychrobacter sp. (strain P... [more]
AROC_PSEPK8.279e-1857.89Chorismate synthase OS=Pseudomonas putida (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC21007A08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308988 ID=CX308988; Name=CX308988; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
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