CX308988

Overview
NameCX308988
Unique NameCX308988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PSEPG (Chorismate synthase OS=Pseudomonas putida (strain GB-1) GN=aroC PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.279e-18
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            +G  F VTT GESHG  +  I+DGCPP + +S AD+Q DLDRR+PG SR TT R+E D  +I SGV EG TTG  I
Sbjct:    6 YGKLFTVTTAGESHGPALVAIVDGCPPGLEISLADLQHDLDRRKPGTSRHTTQRQEADEVEILSGVFEGRTTGCSI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PSEP1 (Chorismate synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=aroC PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.279e-18
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            +G  F VTT GESHG  +  I+DGCPP + +S AD+Q DLDRR+PG SR TT R+E D  +I SGV EG TTG  I
Sbjct:    6 YGKLFTVTTAGESHGPALVAIVDGCPPGLEISLADLQHDLDRRKPGTSRHTTQRQEADEVEILSGVFEGRTTGCSI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CAUCR (Chorismate synthase OS=Caulobacter crescentus GN=aroC PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.279e-18
Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGV------TTGTPI 237
            FG  FRVTT+GESHG  +GC++DGCPP I L+   +QV LD+RRPG  +  T R+E D  +I SGV E        TTGTPI
Sbjct:    6 FGHLFRVTTWGESHGPALGCVVDGCPPGIALTAEMIQVFLDKRRPGNGKFVTQRQEPDAVRILSGVFEDARSNGQRTTGTPI 87          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CAUCN (Chorismate synthase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=aroC PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.279e-18
Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGV------TTGTPI 237
            FG  FRVTT+GESHG  +GC++DGCPP I L+   +QV LD+RRPG  +  T R+E D  +I SGV E        TTGTPI
Sbjct:    6 FGHLFRVTTWGESHGPALGCVVDGCPPGIALTAEMIQVFLDKRRPGNGKFVTQRQEPDAVRILSGVFEDARSNGQRTTGTPI 87          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_BACFR (Chorismate synthase OS=Bacteroides fragilis GN=aroC PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.279e-18
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  FR+T+FGESHG G+G +IDG P  I + E  +Q +L+RRRPGQS ITT RKE D  +  SG+ EG +TG PI
Sbjct:    5 FGNIFRLTSFGESHGKGIGGVIDGFPAGIVIDEEFVQQELNRRRPGQSVITTSRKEADKVEFLSGIFEGKSTGCPI 80          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PSEPW (Chorismate synthase OS=Pseudomonas putida (strain W619) GN=aroC PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.081e-17
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            +G  F VTT GESHG  +  I+DGCPP + +S AD+Q DLDRR+PG SR TT R+E D  +I SGV EG TTG  I
Sbjct:    6 YGKLFTVTTAGESHGPALVAIVDGCPPGLEISLADLQHDLDRRKPGTSRHTTQRQEPDEVEILSGVFEGRTTGCSI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PSEFS (Chorismate synthase OS=Pseudomonas fluorescens (strain SBW25) GN=aroC PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.081e-17
Identity = 45/76 (59.21%), Postives = 52/76 (68.42%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F VTT GESHG  +  I+DGCPP + LS  D+Q DLDRR+PG SR TT R+E D  +I SGV EG TTG  I
Sbjct:    6 FGKLFTVTTAGESHGPALVAIVDGCPPGLELSLEDLQRDLDRRKPGTSRHTTQRQEPDEVEILSGVFEGRTTGCAI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PSEE4 (Chorismate synthase OS=Pseudomonas entomophila (strain L48) GN=aroC PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.081e-17
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            +G  F VTT GESHG  +  I+DGCPP + +S AD+Q DLDRR+PG SR TT R+E D  +I SGV EG TTG  I
Sbjct:    6 YGKLFTVTTAGESHGPALVAIVDGCPPGLEISLADLQHDLDRRKPGTSRHTTQRQEPDEVEILSGVFEGRTTGCSI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_HERA2 (Chorismate synthase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=aroC PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.081e-17
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  FR++T+GESHG G+G +IDGCP  + L  A +Q  LDRRR GQSR+T+ R+E D  +I SG+ EG TTGT +
Sbjct:    6 FGRLFRISTWGESHGVGLGVVIDGCPAGLELDLAAIQAQLDRRRVGQSRMTSARREPDEVEILSGMFEGRTTGTAL 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_BACFN (Chorismate synthase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=aroC PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.081e-17
Identity = 43/76 (56.58%), Postives = 53/76 (69.74%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  FR+T+FGESHG G+G +IDG P  I + E  +Q +L RRRPGQS ITT RKE D  +  SG+ EG +TG PI
Sbjct:    5 FGNIFRLTSFGESHGKGIGGVIDGFPAGIVIDEEFVQQELSRRRPGQSVITTSRKEADKVEFLSGIFEGKSTGCPI 80          
The following BLAST results are available for this feature:
BLAST of CX308988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_PSEPG8.279e-1857.89Chorismate synthase OS=Pseudomonas putida (strain ... [more]
AROC_PSEP18.279e-1857.89Chorismate synthase OS=Pseudomonas putida (strain ... [more]
AROC_CAUCR8.279e-1853.66Chorismate synthase OS=Caulobacter crescentus GN=a... [more]
AROC_CAUCN8.279e-1853.66Chorismate synthase OS=Caulobacter crescentus (str... [more]
AROC_BACFR8.279e-1856.58Chorismate synthase OS=Bacteroides fragilis GN=aro... [more]
AROC_PSEPW1.081e-1757.89Chorismate synthase OS=Pseudomonas putida (strain ... [more]
AROC_PSEFS1.081e-1759.21Chorismate synthase OS=Pseudomonas fluorescens (st... [more]
AROC_PSEE41.081e-1757.89Chorismate synthase OS=Pseudomonas entomophila (st... [more]
AROC_HERA21.081e-1755.26Chorismate synthase OS=Herpetosiphon aurantiacus (... [more]
AROC_BACFN1.081e-1756.58Chorismate synthase OS=Bacteroides fragilis (strai... [more]

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Properties
Property NameValue
Genbank descriptionC21007A08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308988 ID=CX308988; Name=CX308988; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
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