CX308988

Overview
NameCX308988
Unique NameCX308988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_AZOPC (Chorismate synthase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=aroC PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.081e-17
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F++T+FGESHG  +G +IDGCP  I L    +Q +LD+RRPGQS +TT R E+D  +  SG+ EG T GTPI
Sbjct:    4 FGNIFKLTSFGESHGTAIGGVIDGCPAGIVLDMEFVQGELDKRRPGQSELTTSRNESDKVEFLSGIYEGKTIGTPI 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_AGRT5 (Chorismate synthase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aroC PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.081e-17
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGV---SEG---VTTGTPI 237
            FG  FRVTT+GESHG  +GC++DGCPP I  + A++Q  +D+R+PGQSR  T R+E D  K+ SGV    +G    TTGTPI
Sbjct:    6 FGHLFRVTTWGESHGPSLGCVVDGCPPGIRFTLAEVQHWMDKRKPGQSRFVTQRREDDIVKVLSGVMLDEDGETMTTTGTPI 87          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PSEU2 (Chorismate synthase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=aroC PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.412e-17
Identity = 44/76 (57.89%), Postives = 51/76 (67.11%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F VTT GESHG  +  I+DGCPP + L   D+Q DLDRR+PG SR TT R+E D  +I SGV EG TTG  I
Sbjct:    6 FGKLFTVTTAGESHGPALVAIVDGCPPGLELDLQDLQRDLDRRKPGTSRHTTQRQEADEVEILSGVFEGKTTGASI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PSESM (Chorismate synthase OS=Pseudomonas syringae pv. tomato GN=aroC PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.412e-17
Identity = 44/76 (57.89%), Postives = 51/76 (67.11%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F VTT GESHG  +  I+DGCPP + L   D+Q DLDRR+PG SR TT R+E D  +I SGV EG TTG  I
Sbjct:    6 FGKLFTVTTAGESHGPALVAIVDGCPPGLELDLQDLQRDLDRRKPGTSRHTTQRQEADEVEILSGVFEGKTTGASI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PSE14 (Chorismate synthase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=aroC PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.412e-17
Identity = 44/76 (57.89%), Postives = 51/76 (67.11%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F VTT GESHG  +  I+DGCPP + L   D+Q DLDRR+PG SR TT R+E D  +I SGV EG TTG  I
Sbjct:    6 FGKLFTVTTAGESHGPALVAIVDGCPPGLELDLQDLQRDLDRRKPGTSRHTTQRQEADEVEILSGVFEGKTTGASI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_NITSB (Chorismate synthase OS=Nitratiruptor sp. (strain SB155-2) GN=aroC PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.412e-17
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG    +TTFGESHG  +GC++DG P  + + E  +Q +LDRRRPG+S+  T RKE D  +I SGV EG +TGTPI
Sbjct:    4 FGKRLIMTTFGESHGKAIGCVLDGVPAGLDIDETFIQNELDRRRPGKSKFATARKELDEVQILSGVFEGRSTGTPI 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_BACV8 (Chorismate synthase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=aroC PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.412e-17
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  FR+T+FGESHG GVG +IDG P  I +    +Q +L+RRRPGQS +TT RKE DT +  SG+ EG +TG PI
Sbjct:    5 FGNIFRLTSFGESHGPGVGGVIDGFPAGIKIDMDFVQQELNRRRPGQSLLTTSRKEPDTVEFLSGIFEGKSTGCPI 80          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_DICNV (Chorismate synthase OS=Dichelobacter nodosus (strain VCS1703A) GN=aroC PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.844e-17
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F +T+FGESHG  +G IIDGCP RI +   ++Q +LDRR+P +S   + R+E D   ++SG+ EG TTGTPI
Sbjct:    6 FGRAFVLTSFGESHGAAIGGIIDGCPARIAIDSKEIQKELDRRKPARSAYVSSRREADEIHLFSGIFEGQTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_VESOH (Chorismate synthase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=aroC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.409e-17
Identity = 43/75 (57.33%), Postives = 51/75 (68.00%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  F +TT GESHG  +  I+DGCPP + L+E D+Q DLD R+PG SR T+ R E D  KI SG  EG TTGTPI
Sbjct:    7 GKLFTITTAGESHGEALIGIVDGCPPGLALTEVDLQDDLDLRKPGTSRHTSQRHEEDLVKILSGTFEGKTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PSEPF (Chorismate synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=aroC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.146e-17
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            +G  F VTT GESHG  +  I+DGCPP + +S  D+Q DLDRR+PG SR TT R+E D  +I SGV EG TTG  I
Sbjct:    6 YGKLFTVTTAGESHGPALVAIVDGCPPGLEISLEDLQRDLDRRKPGTSRHTTQRQEADEVEILSGVFEGRTTGCSI 81          
The following BLAST results are available for this feature:
BLAST of CX308988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_AZOPC1.081e-1753.95Chorismate synthase OS=Azobacteroides pseudotricho... [more]
AROC_AGRT51.081e-1753.66Chorismate synthase OS=Agrobacterium tumefaciens (... [more]
AROC_PSEU21.412e-1757.89Chorismate synthase OS=Pseudomonas syringae pv. sy... [more]
AROC_PSESM1.412e-1757.89Chorismate synthase OS=Pseudomonas syringae pv. to... [more]
AROC_PSE141.412e-1757.89Chorismate synthase OS=Pseudomonas syringae pv. ph... [more]
AROC_NITSB1.412e-1753.95Chorismate synthase OS=Nitratiruptor sp. (strain S... [more]
AROC_BACV81.412e-1756.58Chorismate synthase OS=Bacteroides vulgatus (strai... [more]
AROC_DICNV1.844e-1751.32Chorismate synthase OS=Dichelobacter nodosus (stra... [more]
AROC_VESOH2.409e-1757.33Chorismate synthase OS=Vesicomyosocius okutanii su... [more]
AROC_PSEPF3.146e-1756.58Chorismate synthase OS=Pseudomonas fluorescens (st... [more]

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Properties
Property NameValue
Genbank descriptionC21007A08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308988 ID=CX308988; Name=CX308988; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
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