CX308988

Overview
NameCX308988
Unique NameCX308988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PSEF5 (Chorismate synthase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=aroC PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.109e-17
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            +G  F VTT GESHG  +  I+DGCPP + L+  D+Q DLDRR+PG SR TT R+E D  +I SGV EG TTG  I
Sbjct:    6 YGKLFTVTTAGESHGPALVAIVDGCPPGLELTLEDLQRDLDRRKPGTSRHTTQRQEPDEVEILSGVFEGKTTGCSI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ARCFU (Chorismate synthase OS=Archaeoglobus fulgidus GN=aroC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.366e-17
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG + RVTT+GESHG  VGC+IDG P  + + E  +Q +++RRRPG+ + TT RKE D  +I SGV EG+TT TPI
Sbjct:    4 FGHFLRVTTWGESHGRAVGCVIDGFPAGLEVDEEFIQREMERRRPGK-KYTTQRKEVDRVEILSGVFEGLTTATPI 78          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_HALLT (Chorismate synthase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=aroC PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.008e-17
Identity = 41/76 (53.95%), Postives = 50/76 (65.79%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F+VTT+GESHG  +G  + G P  + L E  +Q  LDRR+PGQS ITT R E D   + SGV +G TTGTPI
Sbjct:    6 FGRLFQVTTYGESHGEAMGVTVSGVPAGVELDEEAIQAQLDRRKPGQSMITTSRGEPDEVVVNSGVQDGYTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_RUTMC (Chorismate synthase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=aroC PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.153e-17
Identity = 43/75 (57.33%), Postives = 51/75 (68.00%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  F +TT GESHG  +  I+DGCPPR+ L+EAD+Q DLD R+PG S  T+ R E D  KI SG  EG TTGT I
Sbjct:    7 GKLFTITTAGESHGEALIGIVDGCPPRLALTEADLQGDLDLRKPGTSCHTSQRHEEDLVKILSGTFEGKTTGTTI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_METST (Chorismate synthase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=aroC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.561e-16
Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  F+VTTFG SHG  +G  IDGCP  + LS  D+Q +L++RRPG S +TT R E D  +I SG+  G+T GTPI
Sbjct:    7 GEIFKVTTFGLSHGKALGATIDGCPAGLNLSNEDIQNELNKRRPGTSNLTTSRDEKDKVEILSGIFNGMTDGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CHLMU (Chorismate synthase OS=Chlamydia muridarum GN=aroC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.663e-16
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            +G+ F +TT+GESHG  +G +IDGCP  +PL+  D    + RRRPGQ   T+PR+ETD+  I SGV +  TTGTPI
Sbjct:    5 YGSLFSITTWGESHGPSIGVVIDGCPAGLPLAPEDFLPAMKRRRPGQLH-TSPRQETDSVTILSGVYQQKTTGTPI 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CAMJR (Chorismate synthase OS=Campylobacter jejuni (strain RM1221) GN=aroC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.663e-16
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FGT  + T+FGESHG  VGCIIDG P  +   E  +Q +LD+R+ G S+  TPRKE+D  ++ SGV EG TTG PI +
Sbjct:    4 FGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELDKRK-GGSKFATPRKESDKAQVLSGVFEGYTTGHPIAI 80          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CAMJJ (Chorismate synthase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=aroC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.663e-16
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FGT  + T+FGESHG  VGCIIDG P  +   E  +Q +LD+R+ G S+  TPRKE+D  ++ SGV EG TTG PI +
Sbjct:    4 FGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELDKRK-GGSKFATPRKESDKAQVLSGVFEGYTTGHPIAI 80          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CAMJE (Chorismate synthase OS=Campylobacter jejuni GN=aroC PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.663e-16
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FGT  + T+FGESHG  VGCIIDG P  +   E  +Q +LD+R+ G S+  TPRKE+D  ++ SGV EG TTG PI +
Sbjct:    4 FGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELDKRK-GGSKFATPRKESDKAQVLSGVFEGYTTGHPIAI 80          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CAMJD (Chorismate synthase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=aroC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.663e-16
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FGT  + T+FGESHG  VGCIIDG P  +   E  +Q +LD+R+ G S+  TPRKE+D  ++ SGV EG TTG PI +
Sbjct:    4 FGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELDKRK-GGSKFATPRKESDKAQVLSGVFEGYTTGHPIAI 80          
The following BLAST results are available for this feature:
BLAST of CX308988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_PSEF54.109e-1756.58Chorismate synthase OS=Pseudomonas fluorescens (st... [more]
AROC_ARCFU5.366e-1755.26Chorismate synthase OS=Archaeoglobus fulgidus GN=a... [more]
AROC_HALLT7.008e-1753.95Chorismate synthase OS=Halorubrum lacusprofundi (s... [more]
AROC_RUTMC9.153e-1757.33Chorismate synthase OS=Ruthia magnifica subsp. Cal... [more]
AROC_METST1.561e-1653.33Chorismate synthase OS=Methanosphaera stadtmanae (... [more]
AROC_CHLMU2.663e-1652.63Chorismate synthase OS=Chlamydia muridarum GN=aroC... [more]
AROC_CAMJR2.663e-1652.56Chorismate synthase OS=Campylobacter jejuni (strai... [more]
AROC_CAMJJ2.663e-1652.56Chorismate synthase OS=Campylobacter jejuni subsp.... [more]
AROC_CAMJE2.663e-1652.56Chorismate synthase OS=Campylobacter jejuni GN=aro... [more]
AROC_CAMJD2.663e-1652.56Chorismate synthase OS=Campylobacter jejuni subsp.... [more]

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Properties
Property NameValue
Genbank descriptionC21007A08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308988 ID=CX308988; Name=CX308988; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
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