CX308988

Overview
NameCX308988
Unique NameCX308988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CAMJ8 (Chorismate synthase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=aroC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.663e-16
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FGT  + T+FGESHG  VGCIIDG P  +   E  +Q +LD+R+ G S+  TPRKE+D  ++ SGV EG TTG PI +
Sbjct:    4 FGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELDKRK-GGSKFATPRKESDKAQVLSGVFEGYTTGHPIAI 80          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_BUCCC (Chorismate synthase OS=Buchnera aphidicola subsp. Cinara cedri GN=aroC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.478e-16
Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = -1
Query:    4 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 234
            G  F+VTT GESHG  +  IIDG PP + L+  D+Q +L+RRRPG S+ T+ R+E D  +I+SG+ +G+TTGT I +
Sbjct:    7 GKIFKVTTCGESHGPMLAGIIDGVPPGLSLNNKDIQYELNRRRPGFSKFTSQRREKDKVEIFSGIFKGITTGTSIGI 83          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_KORCO (Chorismate synthase OS=Korarchaeum cryptofilum (strain OPF8) GN=aroC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.933e-16
Identity = 41/76 (53.95%), Postives = 50/76 (65.79%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG   R+ +FGESHG  VG I++G P  +PLSE D+Q  LD RRPGQS + + R E D  +I SGV  G TTG PI
Sbjct:    6 FGRELRLISFGESHGPVVGAIVEGAPAGLPLSEEDVQRILDLRRPGQSELVSQRAERDRVEILSGVFNGFTTGAPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CAMHC (Chorismate synthase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=aroC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.012e-15
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG   R+TTFGESHG  +G +IDG P  + + E  +Q +LD+R+PG  +  T RKE D  +I+SG+ EGV+ GTPI
Sbjct:    4 FGRKLRLTTFGESHGNAIGGVIDGFPSGVKIDEKFIQAELDKRKPG-GKFATARKENDKVQIFSGIFEGVSIGTPI 78          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PARUW (Chorismate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=aroC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.322e-15
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F++TT+GESHG  +G +IDGCP  I L+E D+  +L  R+PG++ +T+PR E D  +I SG+  G TTG PI
Sbjct:    6 FGHLFKMTTWGESHGKAMGVVIDGCPSGIFLTEQDINQELYWRKPGRNELTSPRLEEDQVEILSGLFNGQTTGAPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PORGI (Chorismate synthase OS=Porphyromonas gingivalis GN=aroC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.726e-15
Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FR+TTFGESHG  +G +IDGCP  + +    ++ +L RRRPGQS  T+PR+E+D  +  SG+  G TTG PI
Sbjct:    5 GKLFRLTTFGESHGKAIGGVIDGCPAGLFVDMETIERELLRRRPGQSHYTSPRQESDMVQFISGLFRGETTGAPI 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CAMC5 (Chorismate synthase OS=Campylobacter curvus (strain 525.92) GN=aroC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.846e-15
Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG    +TTFGESHG  +G +IDG P  + +    +Q +LDRRRPG+++  T R E D  +I SGV EGV++G PI
Sbjct:    4 FGRKLTLTTFGESHGAAIGGVIDGFPAGVRIDTQFLQSELDRRRPGRNKFATARDEADRAEILSGVFEGVSSGAPI 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PYRCJ (Chorismate synthase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=aroC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.022e-15
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FR+TTFGESHG  VG ++DG P  +PLSE D++ +L+RR      +  PR E +  +I SGV EG T GTPI +
Sbjct:    4 FGREFRITTFGESHGKAVGVVVDGVPAGLPLSEEDVKRELERRMFCHIPVLNPRCEPEEFEILSGVKEGRTQGTPIAI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CHLAB (Chorismate synthase OS=Chlamydophila abortus GN=aroC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.022e-15
Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG+ F +TT+GESHG  +G +IDGCP  + LS  D    + RR PG+   T+PRKE DT  I SG+ +G TTGTPI
Sbjct:    5 FGSLFSLTTWGESHGPCLGVVIDGCPAGLQLSPEDFVPAMSRRCPGRPG-TSPRKEADTVHILSGIYQGKTTGTPI 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CAMC1 (Chorismate synthase OS=Campylobacter concisus (strain 13826) GN=aroC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.022e-15
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG    +T+FGESHG  +G +IDG P  + +    +Q +LD+RRPGQS  TT R E D  +I+SGV +G++TG PI
Sbjct:    4 FGKKLTLTSFGESHGVAIGGVIDGLPAGLKIDADFIQSELDKRRPGQSSFTTARDEADKIEIFSGVFDGMSTGAPI 79          
The following BLAST results are available for this feature:
BLAST of CX308988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_CAMJ82.663e-1652.56Chorismate synthase OS=Campylobacter jejuni subsp.... [more]
AROC_BUCCC3.478e-1650.65Chorismate synthase OS=Buchnera aphidicola subsp. ... [more]
AROC_KORCO5.933e-1653.95Chorismate synthase OS=Korarchaeum cryptofilum (st... [more]
AROC_CAMHC1.012e-1550.00Chorismate synthase OS=Campylobacter hominis (stra... [more]
AROC_PARUW1.322e-1550.00Chorismate synthase OS=Protochlamydia amoebophila ... [more]
AROC_PORGI1.726e-1550.67Chorismate synthase OS=Porphyromonas gingivalis GN... [more]
AROC_CAMC53.846e-1548.68Chorismate synthase OS=Campylobacter curvus (strai... [more]
AROC_PYRCJ5.022e-1550.00Chorismate synthase OS=Pyrobaculum calidifontis (s... [more]
AROC_CHLAB5.022e-1552.63Chorismate synthase OS=Chlamydophila abortus GN=ar... [more]
AROC_CAMC15.022e-1548.68Chorismate synthase OS=Campylobacter concisus (str... [more]

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Properties
Property NameValue
Genbank descriptionC21007A08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308988 ID=CX308988; Name=CX308988; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
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