CX308988

Overview
NameCX308988
Unique NameCX308988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CHLTR (Chorismate synthase OS=Chlamydia trachomatis GN=aroC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.560e-15
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            +G+ F +TT+GESHG  +G +IDGCP  + LS  D    + RRRPGQ   T+PR+E D   I SGV +  TTGTPI
Sbjct:    5 YGSIFSITTWGESHGPAIGVVIDGCPAGLSLSPEDFLPAMARRRPGQLH-TSPRQEPDLVTILSGVYQNKTTGTPI 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CHLTB (Chorismate synthase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=aroC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.560e-15
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            +G+ F +TT+GESHG  +G +IDGCP  + LS  D    + RRRPGQ   T+PR+E D   I SGV +  TTGTPI
Sbjct:    5 YGSIFSITTWGESHGPAIGVVIDGCPAGLSLSPEDFLPAMARRRPGQLH-TSPRQEPDLVTILSGVYQNKTTGTPI 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CHLTA (Chorismate synthase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=aroC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.560e-15
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            +G+ F +TT+GESHG  +G +IDGCP  + LS  D    + RRRPGQ   T+PR+E D   I SGV +  TTGTPI
Sbjct:    5 YGSIFSITTWGESHGPAIGVVIDGCPAGLSLSPEDFLPAMARRRPGQLH-TSPRQEPDLVTILSGVYQNKTTGTPI 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CHLT2 (Chorismate synthase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=aroC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.560e-15
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            +G+ F +TT+GESHG  +G +IDGCP  + LS  D    + RRRPGQ   T+PR+E D   I SGV +  TTGTPI
Sbjct:    5 YGSIFSITTWGESHGPAIGVVIDGCPAGLSLSPEDFLPAMARRRPGQLH-TSPRQEPDLVTILSGVYQNKTTGTPI 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SULTO (Chorismate synthase OS=Sulfolobus tokodaii GN=aroC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.567e-15
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FR+TTFGESHG  VG +IDG P  +P+ + D++ +L  RRPG+ +  T R+E D  +I SGV  G TTG PI +
Sbjct:    6 FGELFRITTFGESHGPMVGVVIDGVPAGLPIKKEDIEFELSFRRPGR-QFVTGRREKDEPEIVSGVYNGRTTGAPITI 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CHLPN (Chorismate synthase OS=Chlamydia pneumoniae GN=aroC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.567e-15
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG+ F  TT+GESHG  +G +IDGCP  + L E+D    + RRRPG    T+ RKE D  +I SGV +G TTGTP+
Sbjct:    5 FGSLFSFTTWGESHGPSIGVVIDGCPAGLELHESDFVPAMKRRRPGNPG-TSSRKENDIVQILSGVYKGKTTGTPL 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CAMFF (Chorismate synthase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=aroC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.119e-14
Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG+  R+TTFGESHG  +G ++DG P  + + E  +Q ++D+R+PG  +  T RKE D  +I SG+ EG +TGTPI
Sbjct:    4 FGSKLRLTTFGESHGKAIGGVLDGFPAGVAIDEEFLQSEMDKRKPG-GKYATSRKEADEVEILSGIFEGFSTGTPI 78          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_METS5 (Chorismate synthase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=aroC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.909e-14
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FR+TTFGESHG  VG ++DG P  + LS+ D++ +L  RRPG+  + + R+E D  +I SGV  G TTG+PI +
Sbjct:    6 FGKIFRITTFGESHGPAVGVVVDGVPAGLRLSQEDLEFELSFRRPGRLYV-SGRREKDVPEILSGVYNGRTTGSPIAI 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CHLCV (Chorismate synthase OS=Chlamydophila caviae GN=aroC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.909e-14
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG+ F +TT+GESHG  +G +IDGCP  + L   D    + RR PG+   T+PRKE D   I SGV +G TTGTPI
Sbjct:    5 FGSLFSLTTWGESHGPSIGVVIDGCPAGLLLDPEDFIPAMSRRSPGRPG-TSPRKEADIVHILSGVYQGKTTGTPI 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_AERPE (Chorismate synthase OS=Aeropyrum pernix GN=aroC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.909e-14
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = -1
Query:    1 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVF 234
            G  FRV+ FGESHG GVG ++ G PP + + EA +  +L+RRRPG     +PR+E D  +I SGV  G TTG PI +F
Sbjct:    8 GEVFRVSIFGESHGPGVGALVTGVPPGLEVDEAYINRELERRRPG-GPYASPRREADRVEILSGVFRGRTTGAPILLF 84          
The following BLAST results are available for this feature:
BLAST of CX308988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_CHLTR6.560e-1551.32Chorismate synthase OS=Chlamydia trachomatis GN=ar... [more]
AROC_CHLTB6.560e-1551.32Chorismate synthase OS=Chlamydia trachomatis (stra... [more]
AROC_CHLTA6.560e-1551.32Chorismate synthase OS=Chlamydia trachomatis (stra... [more]
AROC_CHLT26.560e-1551.32Chorismate synthase OS=Chlamydia trachomatis (stra... [more]
AROC_SULTO8.567e-1550.00Chorismate synthase OS=Sulfolobus tokodaii GN=aroC... [more]
AROC_CHLPN8.567e-1551.32Chorismate synthase OS=Chlamydia pneumoniae GN=aro... [more]
AROC_CAMFF1.119e-1447.37Chorismate synthase OS=Campylobacter fetus subsp. ... [more]
AROC_METS51.909e-1448.72Chorismate synthase OS=Metallosphaera sedula (stra... [more]
AROC_CHLCV1.909e-1451.32Chorismate synthase OS=Chlamydophila caviae GN=aro... [more]
AROC_AERPE1.909e-1450.00Chorismate synthase OS=Aeropyrum pernix GN=aroC PE... [more]

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Properties
Property NameValue
Genbank descriptionC21007A08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308988 ID=CX308988; Name=CX308988; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
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