CX308988

Overview
NameCX308988
Unique NameCX308988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PYRIL (Chorismate synthase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=aroC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.255e-14
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FR+TTFGESHG  +G +IDG P  + L+E D++ +L+RR      +  PR E +  +I SGV EG T GTPI V
Sbjct:    4 FGREFRITTFGESHGKAIGVVIDGVPAGLELTEEDIKRELERRMFCHIPVLNPRCEPEEVEILSGVKEGYTQGTPIAV 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_DEHSC (Chorismate synthase OS=Dehalococcoides sp. (strain CBDB1) GN=aroC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.255e-14
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  F++T+FGESHG  VG +IDG P  + ++  ++Q+++D+R+ G    TTPR+E D  +I+SG+    TTG PI
Sbjct:    6 GKLFQITSFGESHGDCVGVVIDGVPAGLAINVDEIQIEVDKRKSGAKAHTTPRREDDRIEIFSGIFNNFTTGAPI 80          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_DEHSB (Chorismate synthase OS=Dehalococcoides sp. (strain BAV1) GN=aroC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.255e-14
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  F++T+FGESHG  VG +IDG P  + ++  ++Q+++D+R+ G    TTPR+E D  +I+SG+    TTG PI
Sbjct:    6 GKLFQITSFGESHGDCVGVVIDGVPAGLAINVDEIQIEVDKRKSGAKAHTTPRREDDRIEIFSGIFNNFTTGAPI 80          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SULIY (Chorismate synthase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=aroC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.252e-14
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FRVTTFGESHG  VG +IDG P  +PL+  D++ +L+ RRPG+  + + R+E D  +I SG+    TTG+PI V
Sbjct:    6 FGKLFRVTTFGESHGPAVGVVIDGVPAGLPLTVEDIKFELEFRRPGRLYV-SGRREKDEPEILSGIFNNRTTGSPIAV 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SULIM (Chorismate synthase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=aroC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.252e-14
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FRVTTFGESHG  VG +IDG P  +PL+  D++ +L+ RRPG+  + + R+E D  +I SG+    TTG+PI V
Sbjct:    6 FGKLFRVTTFGESHGPAVGVVIDGVPAGLPLTVEDIKFELEFRRPGRLYV-SGRREKDEPEILSGIFNNRTTGSPIAV 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SULIL (Chorismate synthase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=aroC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.252e-14
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FRVTTFGESHG  VG +IDG P  +PL+  D++ +L+ RRPG+  + + R+E D  +I SG+    TTG+PI V
Sbjct:    6 FGKLFRVTTFGESHGPAVGVVIDGVPAGLPLTVEDIKFELEFRRPGRLYV-SGRREKDEPEILSGIFNNRTTGSPIAV 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SULIK (Chorismate synthase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=aroC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.252e-14
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FRVTTFGESHG  VG +IDG P  +PL+  D++ +L+ RRPG+  + + R+E D  +I SG+    TTG+PI V
Sbjct:    6 FGKLFRVTTFGESHGPAVGVVIDGVPAGLPLTVEDIKFELEFRRPGRLYV-SGRREKDEPEILSGIFNNRTTGSPIAV 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SULIA (Chorismate synthase OS=Sulfolobus islandicus (strain M.16.27) GN=aroC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.252e-14
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FRVTTFGESHG  VG +IDG P  +PL+  D++ +L+ RRPG+  + + R+E D  +I SG+    TTG+PI V
Sbjct:    6 FGKLFRVTTFGESHGPAVGVVIDGVPAGLPLTVEDIKFELEFRRPGRLYV-SGRREKDEPEILSGIFNNRTTGSPIAV 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PYRAE (Chorismate synthase OS=Pyrobaculum aerophilum GN=aroC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.252e-14
Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FR+TTFGESHG  VG +IDG P  +PLSE D++ +L+RR         PR E +  +I SGV  G T GTPI +
Sbjct:    4 FGREFRITTFGESHGKAVGVVIDGVPAGLPLSEEDIKRELERRMFCHIHWLNPRCEPEEFEILSGVKNGHTQGTPIAI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CHLFF (Chorismate synthase OS=Chlamydophila felis (strain Fe/C-56) GN=aroC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.252e-14
Identity = 40/76 (52.63%), Postives = 49/76 (64.47%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F +TT+GESHG  +G +IDGCP  +PLS  D    + RR PG+   T+ RKE D   I SGV +G TTGTPI
Sbjct:    5 FGCLFSLTTWGESHGPSIGLVIDGCPAGLPLSLEDFVPVMLRRSPGRLG-TSQRKEADIVHILSGVYQGKTTGTPI 79          
The following BLAST results are available for this feature:
BLAST of CX308988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_PYRIL3.255e-1448.72Chorismate synthase OS=Pyrobaculum islandicum (str... [more]
AROC_DEHSC3.255e-1444.00Chorismate synthase OS=Dehalococcoides sp. (strain... [more]
AROC_DEHSB3.255e-1444.00Chorismate synthase OS=Dehalococcoides sp. (strain... [more]
AROC_SULIY4.252e-1450.00Chorismate synthase OS=Sulfolobus islandicus (stra... [more]
AROC_SULIM4.252e-1450.00Chorismate synthase OS=Sulfolobus islandicus (stra... [more]
AROC_SULIL4.252e-1450.00Chorismate synthase OS=Sulfolobus islandicus (stra... [more]
AROC_SULIK4.252e-1450.00Chorismate synthase OS=Sulfolobus islandicus (stra... [more]
AROC_SULIA4.252e-1450.00Chorismate synthase OS=Sulfolobus islandicus (stra... [more]
AROC_PYRAE4.252e-1450.00Chorismate synthase OS=Pyrobaculum aerophilum GN=a... [more]
AROC_CHLFF4.252e-1452.63Chorismate synthase OS=Chlamydophila felis (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21007A08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308988 ID=CX308988; Name=CX308988; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
back to top