CX308988

Overview
NameCX308988
Unique NameCX308988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SULSO (Chorismate synthase OS=Sulfolobus solfataricus GN=aroC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.553e-14
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FR+TTFGESHG  VG +IDG P  +PL+  D++ +L+ RRPG+  + + R+E D  +I SG+    TTG+PI V
Sbjct:    6 FGKLFRITTFGESHGPAVGVVIDGVPAGLPLTVEDIKFELEFRRPGRLYV-SGRREKDEPEILSGIFNNRTTGSPIAV 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CALMQ (Chorismate synthase OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=aroC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.252e-14
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = -1
Query:    4 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 234
            G  FRVTTFGESHG  VG +IDG P  I L+E  ++ +L+RRR     +  PR E +  +I SG+ +G+TTGTPI +
Sbjct:    5 GVVFRVTTFGESHGPAVGVVIDGVPAGIQLNEDYIRRELNRRRFCHIPVLNPRCEDEDFQILSGIKDGLTTGTPIAI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SULIN (Chorismate synthase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=aroC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.472e-14
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FRVTTFGESHG  VG +IDG P  +PL+  D++ +L+ R+PG+  + + R+E D  +I SG+    TTG+PI V
Sbjct:    6 FGKLFRVTTFGESHGPAVGVVIDGVPAGLPLTVEDIKFELEFRKPGRLYV-SGRREKDEPEILSGIFNNRTTGSPIAV 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PYRAR (Chorismate synthase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=aroC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.472e-14
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG   R+TTFGESHG  +G +IDG P  +PL+E D++ +LDRR         PR E +  +I SGV +G T GTPI +
Sbjct:    4 FGRELRITTFGESHGRAIGVVIDGVPAGLPLTEEDIRKELDRRMFCHIHWLNPRCEPEEFEILSGVKDGHTQGTPIAI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_HELPS (Chorismate synthase OS=Helicobacter pylori (strain Shi470) GN=aroC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.472e-14
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G + R+TTFGESHG  +G ++DG P  I +  A ++ ++ RR+ G++   TPRKE D  +I SGV EG +TGTPI
Sbjct:    5 GRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKRRQGGRNVFITPRKEDDKVEITSGVFEGFSTGTPI 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_HELPG (Chorismate synthase OS=Helicobacter pylori (strain G27) GN=aroC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.237e-13
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G + R+TTFGESHG  +G ++DG P  I +  A ++ ++ RR+ G++  TTPRKE D  +I SGV E  +TGTPI
Sbjct:    5 GRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKRRQGGRNVFTTPRKEDDKVEITSGVFEDFSTGTPI 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_THENV (Chorismate synthase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=aroC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.616e-13
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG   R+TTFGESHG  +G +IDG P  + L+E D++ +L+RR      +  PR E +  +I SGV EG T GTPI V
Sbjct:    4 FGRELRITTFGESHGKAIGVVIDGVPAGLELTEEDIKRELERRMFCHIPVLNPRCEPEEVEILSGVKEGYTQGTPIAV 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_HELAH (Chorismate synthase OS=Helicobacter acinonychis (strain Sheeba) GN=aroC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.756e-13
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G + R+TTFGESHG  +G ++DG P  I +    ++ ++ RR+ G++  TTPRKE D  +I SGV E  +TGTPI
Sbjct:    5 GHFLRLTTFGESHGSVIGGVLDGMPSGIKIDYELLENEMKRRQGGRNAFTTPRKEDDKVEITSGVFEDFSTGTPI 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_HELPJ (Chorismate synthase OS=Helicobacter pylori J99 GN=aroC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.599e-13
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G + R+TTFGESHG  +G ++DG P  I +    ++ ++ RR+ G++  TTPRKE D  +I SGV EG + GTPI
Sbjct:    5 GRFLRLTTFGESHGDMIGGVLDGMPSGIKIDYDLLENEMKRRQGGRNIFTTPRKEDDKVEITSGVFEGFSAGTPI 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_HELPY (Chorismate synthase OS=Helicobacter pylori GN=aroC PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.140e-13
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G + R+TTFGESHG  +G ++DG P  I +  A ++ ++ RR+ G++   TPRKE D  +I SGV E  +TGTPI
Sbjct:    5 GRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKRRQGGRNVFITPRKEDDKVEITSGVFEDFSTGTPI 79          
The following BLAST results are available for this feature:
BLAST of CX308988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_SULSO5.553e-1448.72Chorismate synthase OS=Sulfolobus solfataricus GN=... [more]
AROC_CALMQ7.252e-1449.35Chorismate synthase OS=Caldivirga maquilingensis (... [more]
AROC_SULIN9.472e-1448.72Chorismate synthase OS=Sulfolobus islandicus (stra... [more]
AROC_PYRAR9.472e-1447.44Chorismate synthase OS=Pyrobaculum arsenaticum (st... [more]
AROC_HELPS9.472e-1448.00Chorismate synthase OS=Helicobacter pylori (strain... [more]
AROC_HELPG1.237e-1348.00Chorismate synthase OS=Helicobacter pylori (strain... [more]
AROC_THENV1.616e-1347.44Chorismate synthase OS=Thermoproteus neutrophilus ... [more]
AROC_HELAH2.756e-1346.67Chorismate synthase OS=Helicobacter acinonychis (s... [more]
AROC_HELPJ3.599e-1346.67Chorismate synthase OS=Helicobacter pylori J99 GN=... [more]
AROC_HELPY6.140e-1346.67Chorismate synthase OS=Helicobacter pylori GN=aroC... [more]

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Properties
Property NameValue
Genbank descriptionC21007A08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308988 ID=CX308988; Name=CX308988; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
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