CX308988

Overview
NameCX308988
Unique NameCX308988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12468 contig Ccv1_Contig12468:313..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_HELPH (Chorismate synthase OS=Helicobacter pylori (strain HPAG1) GN=aroC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.140e-13
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G + R+TTFGESHG  +G ++DG P  I +  A ++ ++ RR+ G++   TPRKE D  +I SGV E  +TGTPI
Sbjct:    5 GCFLRLTTFGESHGDMIGGVLDGMPSGIKIDYALLENEMKRRQGGRNVFITPRKEDDKVEITSGVFEDFSTGTPI 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_HELP2 (Chorismate synthase OS=Helicobacter pylori (strain P12) GN=aroC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.140e-13
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G + R+TTFGESHG  +G ++DG P  I +  A ++ ++ RR+ G++   TPRKE D  +I SGV E  +TGTPI
Sbjct:    5 GRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKRRQGGRNVFITPRKEDDKVEITSGVFEDFSTGTPI 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SULAC (Chorismate synthase OS=Sulfolobus acidocaldarius GN=aroC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.368e-12
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = -1
Query:    4 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 234
            G  FR+TTFGESHG  +G I+DG P  + +S+ D++ +L  RRPG+ +  + R+E D  +I SGV  G TTG P+ +
Sbjct:    7 GKMFRITTFGESHGPMIGVIVDGVPAGLYISKEDIEFELSFRRPGK-QFVSGRREKDEPEIVSGVYNGRTTGAPLTI 82          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PYRKO (Chorismate synthase OS=Pyrococcus kodakaraensis GN=aroC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.786e-12
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = -1
Query:    4 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 234
            G     + FGESHG  VG +++G PP I +S  +++ +L+RR+ G  R  T RKETD  KI SGV  G TTGTP+ V
Sbjct:    3 GKLLSFSLFGESHGKAVGVLVEGLPPGIEVSVEELKRELERRK-GIERFATKRKETDEPKILSGVFRGRTTGTPVAV 78          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_DEHE1 (Chorismate synthase OS=Dehalococcoides ethenogenes (strain 195) GN=aroC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.047e-12
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  F++T+FGESHG  VG +IDG P  + ++  ++QV++D+R+       TPR E D  +I+SG+    TTG PI
Sbjct:    6 GKLFQITSFGESHGDCVGVVIDGVPAGLAINVDEIQVEVDKRKSRAKAHATPRCEDDRIEIFSGILNNFTTGAPI 80          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_THEGJ (Chorismate synthase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=aroC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.788e-12
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = -1
Query:    4 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 234
            G     T FGESHG  VG +I+G PP I +   +M+ +L+RR+ G  R +T R+E+D   I SGV  G TTGTP+ V
Sbjct:    3 GKLLSFTLFGESHGKAVGILIEGLPPGIEVKVEEMKAELERRK-GIRRFSTKRRESDEPVIVSGVFNGFTTGTPVTV 78          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PYRAB (Chorismate synthase OS=Pyrococcus abyssi GN=aroC PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.400e-11
Identity = 36/77 (46.75%), Postives = 46/77 (59.74%), Query Frame = -1
Query:    4 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 234
            G     T FGESHG GVG +I G PP I +S  ++  +L+RR+ G   ++T R E D   I SG+  G TTGTPI V
Sbjct:    3 GRVLSFTLFGESHGKGVGVVITGIPPGIKVSHEELVKELERRK-GIPGLSTARSEPDNPIILSGIFRGYTTGTPIAV 78          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_THEAC (Chorismate synthase OS=Thermoplasma acidophilum GN=aroC PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.802e-11
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G+  ++T FG SHG  VG IIDG P    +    +Q  ++ RRPG S +T+ RKE D  +I SG+ EG T G+P+
Sbjct:    5 GSSMKMTVFGSSHGEAVGSIIDGFPIGFKIPLDYVQKYMEYRRPGSSILTSQRKEDDEVEIISGLHEGYTDGSPL 79          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_AQUAE (Chorismate synthase OS=Aquifex aeolicus GN=aroC PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.802e-11
Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = -1
Query:    1 YFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVF 228
            Y R  T GESHG G+  I++G P  +PLSE ++  +L RR+ G  R    + E DT +I SGV  G T G+PI +F
Sbjct:    5 YLRFLTAGESHGKGLTAILEGIPANLPLSEEEINHELRRRQRGYGRGGRMKIEKDTAEILSGVRFGKTLGSPIALF 80          
The following BLAST results are available for this feature:
BLAST of CX308988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_HELPH6.140e-1346.67Chorismate synthase OS=Helicobacter pylori (strain... [more]
AROC_HELP26.140e-1346.67Chorismate synthase OS=Helicobacter pylori (strain... [more]
AROC_SULAC1.368e-1245.45Chorismate synthase OS=Sulfolobus acidocaldarius G... [more]
AROC_PYRKO1.786e-1248.05Chorismate synthase OS=Pyrococcus kodakaraensis GN... [more]
AROC_DEHE13.047e-1242.67Chorismate synthase OS=Dehalococcoides ethenogenes... [more]
AROC_THEGJ6.788e-1246.75Chorismate synthase OS=Thermococcus gammatolerans ... [more]
AROC_PYRAB4.400e-1146.75Chorismate synthase OS=Pyrococcus abyssi GN=aroC P... [more]
AROC_THEAC9.802e-1144.00Chorismate synthase OS=Thermoplasma acidophilum GN... [more]
AROC_AQUAE9.802e-1144.74Chorismate synthase OS=Aquifex aeolicus GN=aroC PE... [more]

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Properties
Property NameValue
Genbank descriptionC21007A08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308988 ID=CX308988; Name=CX308988; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
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