CX309002

Overview
NameCX309002
Unique NameCX309002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length472
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14574 contig Ccv1_Contig14574:717..1188. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309002 vs. ExPASy Swiss-Prot
Match: MUG89_SCHPO (Meiotically up-regulated gene 89 protein OS=Schizosaccharomyces pombe GN=mug89 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 8.688e-18
Identity = 58/144 (40.28%), Postives = 78/144 (54.17%), Query Frame = -3
Query:   72 QLDNFYQNHRRYVKSRNDEQLKKRSKTSET---SQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSR---NKRQLTVNKNGIAWKSDRDHKFGKEVFPSNF---QNGTL-IGGAHLNESIP-LSKQEDLIVWMRTAALPTFRKL 470
            +L NF+QNHRRY KS +++QL+  + T++      C P +   D KP  PCGLIA SLFNDT++  R   +    T +   IAW SD+         P +     N  L     +   ++P LS  E+L VWMRTA LPTF KL
Sbjct:  153 RLTNFFQNHRRYAKSVDEKQLQGVALTADEVKGGNCFPLEVNEDDKPYYPCGLIANSLFNDTFSSLRLLDDNSVYTFSTKNIAWASDKRRFLKTNYSPDDVAPPPNWVLRYPDGYTESNMPDLSTMENLQVWMRTAGLPTFSKL 296          
BLAST of CX309002 vs. ExPASy Swiss-Prot
Match: CC50B_HUMAN (Cell cycle control protein 50B OS=Homo sapiens GN=TMEM30B PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.936e-17
Identity = 56/159 (35.22%), Postives = 83/159 (52.20%), Query Frame = -3
Query:   60 QLDNFYQNHRRYVKSRNDEQLK--KRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKR------QLTVNKNGIAWKSDRDHKFGKEVF--------------PSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKI 470
            +L NFYQN+RRY  SR+D QL     +     ++C P   +  G PI PCG IA SLFND+++    ++      ++ ++++GIAW +D   KF                   P N++          N +  ++  +D +VWMRTAALPTFRKLY +I
Sbjct:  113 ELTNFYQNNRRYGVSRDDAQLSGLPSALRHPVNECAPYQRSAAGLPIAPCGAIANSLFNDSFSLWHQRQPGGPYVEVPLDRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTAPPPNWRRPVYELSPDPNNTGFIN--QDFVVWMRTAALPTFRKLYARI 269          
BLAST of CX309002 vs. ExPASy Swiss-Prot
Match: CC50B_MOUSE (Cell cycle control protein 50B OS=Mus musculus GN=Tmem30b PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.528e-17
Identity = 57/166 (34.34%), Postives = 83/166 (50.00%), Query Frame = -3
Query:   60 QLDNFYQNHRRYVKSRNDEQLKKRSKTSE--TSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKR------QLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHL----------NESIPLSK-----------QEDLIVWMRTAALPTFRKLYGKI 470
            +L NFYQN+RRY  SR+D QL   +       ++C P     DG PI PCG IA SLFND+++    ++      ++ +++  IAW +D         +   F+N  L+ G+            N   P+ +            +D +VWMRTAALPTFRKLY +I
Sbjct:  113 ELSNFYQNNRRYGVSRDDAQLSGLASALRHPANECAPYQFRSDGLPIAPCGAIANSLFNDSFSLWHQRQPSDPFVEVPLDRTAIAWWTD---------YHVKFRNPPLVNGSLALAFRGTAPPPNWHRPVYELSPDPNNTGFINQDFVVWMRTAALPTFRKLYARI 269          
BLAST of CX309002 vs. ExPASy Swiss-Prot
Match: CC50C_MOUSE (Cell cycle control protein 50C OS=Mus musculus GN=Tmem30c PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.606e-17
Identity = 55/155 (35.48%), Postives = 83/155 (53.55%), Query Frame = -3
Query:   57 QLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLT-----VNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIPLSK------------QEDLIVWMRTAALPTFRKLYGKIE 470
            +L  FYQN  +Y+ SR++ QL  +    +T+ C+P   + +  PI+PCG IA S+FNDT T S N    T     + K+G+ W +D+  KF +    SNF +        L+ + P+ +             ED IVWMRTAA PTF+ LY +++
Sbjct:  109 KLYGFYQNLYQYILSRSNSQLVGKD-IWDTTNCDPFQVSHNDTPIIPCGAIANSIFNDTITLSYNLNSSTQIEVPMLKSGLTWWTDKYVKF-RNPRSSNFTSTFAGSSKPLHWAKPIYELDLDDPENNAFLNEDFIVWMRTAAFPTFKTLYRRLK 261          
BLAST of CX309002 vs. ExPASy Swiss-Prot
Match: YNI7_SCHPO (Uncharacterized protein C11B10.07c OS=Schizosaccharomyces pombe GN=SPBC11B10.07c PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.132e-16
Identity = 54/153 (35.29%), Postives = 79/153 (51.63%), Query Frame = -3
Query:   72 QLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQ----CEPEDTTPDGKPIVPCGLIAWSLFNDTYT---------FSRNKRQLTVNKNGIAWKSDRD------HKFGKEVFPSNFQNGTLIGGAHLNESIP-LSKQEDLIVWMRTAALPTFRKL 470
            +L NFYQNHRRY  S +  QL   ++T    +    C+P +   +GKP  PCG+IA SLFND+Y+          S +     +  NG AW  DR+      +   + V P N+    +    + +++IP +S  +   +WMR AALPTF KL
Sbjct:  130 RLKNFYQNHRRYTVSADMFQLLGEARTVAQLKSYGFCKPLEANEEGKPYYPCGIIANSLFNDSYSSLLRYESFDSSNSLGLYNMTTNGTAWPEDRERYKKTKYNASQIVPPPNW--AKMFPNGYTDDNIPDVSTWDAFQIWMRAAALPTFSKL 280          
BLAST of CX309002 vs. ExPASy Swiss-Prot
Match: YN8S_YEAST (Uncharacterized protein YNR048W OS=Saccharomyces cerevisiae GN=YNR048W PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.132e-16
Identity = 61/169 (36.09%), Postives = 86/169 (50.89%), Query Frame = -3
Query:    6 QLDNFYQNHRRYVKSRNDEQLKKRSKTSET--SQCEPEDTTPDGKPIVPCGLIAWSLFNDTY----TFSRNKRQLTVNKNGIAWKSDRDHKFGKEVF-------PSNFQNGTLIGGAHLNESIP-LSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNY 470
            +L NF QN+R YV+S + +QLK ++         C+P  T  + K I PCGLIA S+FNDT+    T   +     +   GIAW +D  H++GK  +       P N+    L    + +++IP L   E   +WMRTAALP F KL  K E +     I    +E NY
Sbjct:  145 RLTNFNQNYREYVQSLDLDQLKGKALIGNDLDPNCDPLRTV-ENKTIFPCGLIANSMFNDTFGTTLTGVNDTADYLLTTKGIAWDTD-SHRYGKTEYNASDIVPPPNW--AKLFPNGYTDDNIPDLQNWEQFKIWMRTAALPNFYKLAMKNETNGLGKGIYIADIELNY 309          
BLAST of CX309002 vs. ExPASy Swiss-Prot
Match: CC50C_MACFA (Cell cycle control protein 50C OS=Macaca fascicularis GN=TMEM30C PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.366e-15
Identity = 56/156 (35.90%), Postives = 79/156 (50.64%), Query Frame = -3
Query:   60 QLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRN-----KRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLNESIP-----LSKQE---------DLIVWMRTAALPTFRKLYGKI 470
            +L  FYQN  RYV+SR++ QL  +        C P   + +  PIVPCG IA S+FNDT   S N     + ++ + K+G+ W +D+  KF     PS+        G     + P     L K++         D IVWMR AA PTF+KLYG++
Sbjct:  109 KLYGFYQNLYRYVRSRSNRQLVGKD-VKAVEDCAPFKMSDNKTPIVPCGAIANSMFNDTIILSHNINSSVQIKVPMLKSGLTWWTDKYVKFQN---PSSKNLADEFRGTTKPPNWPKPIYDLDKKDPRNNGFLNDDFIVWMRAAAFPTFKKLYGRL 260          
BLAST of CX309002 vs. ExPASy Swiss-Prot
Match: CC50C_BOVIN (Cell cycle control protein 50C OS=Bos taurus GN=TMEM30C PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.828e-14
Identity = 54/155 (34.84%), Postives = 80/155 (51.61%), Query Frame = -3
Query:   60 QLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDT----YTFSRNKR-QLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGA----------HLNESIPLSK---QEDLIVWMRTAALPTFRKLYGKI 470
            +L  FYQN  RY+ SR++ QL   +   +   C P  T+ +G PI PCG IA S+FNDT    Y F+ +   ++ + +   AW +D+  KF    F +   +    G A           L+E+ P +     +D IVWMRTAA P F+KLY ++
Sbjct:  109 KLYGFYQNLYRYILSRSNIQLVG-ADVKDVRNCAPFRTSDNGLPIAPCGAIANSMFNDTIVLWYNFNSSTHIRVPMVRTETAWWTDKYVKFQNPAFQN--LSSAFAGTAKPPNWPKPVYELDENDPGNNGFINDDFIVWMRTAAFPNFKKLYRRL 260          
BLAST of CX309002 vs. ExPASy Swiss-Prot
Match: CDC50_YEAST (Cell division control protein 50 OS=Saccharomyces cerevisiae GN=CDC50 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.448e-12
Identity = 54/152 (35.53%), Postives = 78/152 (51.32%), Query Frame = -3
Query:   57 QLDNFYQNHRRYVKSRNDEQL--KKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTY----TFSRNKRQLTVNKNGIAWKSDRDHKFGKEVF-------PSNFQNGTLIGGAHLNESIP-LSKQEDLIVWMRTAALPTFRKLYGKIE 470
            ++ NFYQNHRRYV+S + +Q+  +   K    + C P  +  D K I PCGLIA S+FNDT+    +   +     +    I+W  DR H+F    +       P N+      G  + +E++P +   E+  VWMRTAA P F KL  K E
Sbjct:  142 KITNFYQNHRRYVQSFDTKQILGEPIKKDDLDTSCSPIRSRED-KIIYPCGLIANSMFNDTFSQVLSGIDDTEDYNLTNKHISWSIDR-HRFKTTKYNASDIVPPPNWMKKYPDG--YTDENLPDIHTWEEFQVWMRTAAFPKFYKLTLKNE 289          
The following BLAST results are available for this feature:
BLAST of CX309002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
MUG89_SCHPO8.688e-1840.28Meiotically up-regulated gene 89 protein OS=Schizo... [more]
CC50B_HUMAN1.936e-1735.22Cell cycle control protein 50B OS=Homo sapiens GN=... [more]
CC50B_MOUSE2.528e-1734.34Cell cycle control protein 50B OS=Mus musculus GN=... [more]
CC50C_MOUSE9.606e-1735.48Cell cycle control protein 50C OS=Mus musculus GN=... [more]
YNI7_SCHPO8.132e-1635.29Uncharacterized protein C11B10.07c OS=Schizosaccha... [more]
YN8S_YEAST8.132e-1636.09Uncharacterized protein YNR048W OS=Saccharomyces c... [more]
CC50C_MACFA2.366e-1535.90Cell cycle control protein 50C OS=Macaca fascicula... [more]
CC50C_BOVIN5.828e-1434.84Cell cycle control protein 50C OS=Bos taurus GN=TM... [more]
CDC50_YEAST2.448e-1235.53Cell division control protein 50 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC21007B11Rv AbsLeaSub1 Citrus clementina cDNA clone C21007B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309002 ID=CX309002; Name=CX309002; organism=Citrus clementina; type=EST; length=472bp
GTGTTGTAGTTGTTTTCCAATATCACATCTATAATATCATTCTCTTCGAG
ATCCACCTCTATTTTCCCATACAACTTCCTGAAAGTGGGCAAAGCTGCTG
TCCGCATCCAAACTATAAGGTCCTCTTGCTTACTCAATGGTATGGATTCA
TTAAGATGTGCACCACCTATCAGAGTCCCATTTTGGAAGTTGCTAGGAAA
AACTTCTTTGCCAAACTTGTGATCCCTATCACTCTTCCATGCGATACCGT
TCTTGTTCACTGTCAACTGTCTCTTGTTGCGGGAAAAAGTGTATGTATCG
TTAAACAAACTCCAAGCAATAAGGCCACAAGGGACAATGGGCTTTCCATC
TGGGGTGGTATCTTCGGGCTCACACTGAGATGTTTCACTTGTTTTACTCC
GTTTTTTCAACTGCTCATCATTTCGGCTCTTAACATATCTGCGATGATTC
TGGTAGAAATTATCGAGTTGAT
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