CX309019

Overview
NameCX309019
Unique NameCX309019
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig971 contig Ccv1_Contig971:1..556. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX309019 vs. ExPASy Swiss-Prot
Match: CTPAL_STAAN (Probable ctpA-like serine protease OS=Staphylococcus aureus (strain N315) GN=SA1253 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.996e-11
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 3 
Query:   45 VIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKGLIQSVYELHDGSGVVVTIGKYVTPNHMDINGNGIEPD 266
            + +LVN  +ASASE+   AL D  +A + G KTFGKG++Q+  E  DGS +  T  K++TP+   I+G GI+PD
Sbjct:  319 ISILVNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIKPD 392
[Close]
BLAST of CX309019 vs. ExPASy Swiss-Prot
Match: CTPAL_STAAM (Probable ctpA-like serine protease OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV1420 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.996e-11
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 3 
Query:   45 VIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKGLIQSVYELHDGSGVVVTIGKYVTPNHMDINGNGIEPD 266
            + +LVN  +ASASE+   AL D  +A + G KTFGKG++Q+  E  DGS +  T  K++TP+   I+G GI+PD
Sbjct:  319 ISILVNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIKPD 392
[Close]
BLAST of CX309019 vs. ExPASy Swiss-Prot
Match: CTPAL_STAAC (Probable ctpA-like serine protease OS=Staphylococcus aureus (strain COL) GN=SACOL1455 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.996e-11
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 3 
Query:   45 VIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKGLIQSVYELHDGSGVVVTIGKYVTPNHMDINGNGIEPD 266
            + +LVN  +ASASE+   AL D  +A + G KTFGKG++Q+  E  DGS +  T  K++TP+   I+G GI+PD
Sbjct:  319 ISILVNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIKPD 392
[Close]
BLAST of CX309019 vs. ExPASy Swiss-Prot
Match: CTPAL_STAAB (Probable ctpA-like serine protease OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1275c PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.996e-11
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 3 
Query:   45 VIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKGLIQSVYELHDGSGVVVTIGKYVTPNHMDINGNGIEPD 266
            + +LVN  +ASASE+   AL D  +A + G KTFGKG++Q+  E  DGS +  T  K++TP+   I+G GI+PD
Sbjct:  319 ISILVNEGSASASEVFTGALKDYNKAKVYGSKTFGKGVVQTTREFKDGSLLKYTEMKWLTPDGHYIHGKGIKPD 392
The following BLAST results are available for this feature:
BLAST of CX309019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CTPAL_STAAN8.996e-1145.95Probable ctpA-like serine protease OS=Staphylococc... [more]
CTPAL_STAAM8.996e-1145.95Probable ctpA-like serine protease OS=Staphylococc... [more]
CTPAL_STAAC8.996e-1145.95Probable ctpA-like serine protease OS=Staphylococc... [more]
CTPAL_STAAB8.996e-1145.95Probable ctpA-like serine protease OS=Staphylococc... [more]

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Properties
Property NameValue
Genbank descriptionC21007D08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309019 ID=CX309019; Name=CX309019; organism=Citrus clementina; type=EST; length=556bp
AAAAGACCATTGTTGCTGATAATAGTCCACTGGTTACAGCTCCTGTAATT
GTTTTGGTGAACAACAGAACCGCTAGTGCAAGTGAAATTGTAGCCTCTGC
ACTTCATGATAACTGCAGAGCTGTTCTAGTGGGGGAAAAGACTTTTGGCA
AGGGTTTGATTCAATCTGTGTATGAACTTCATGATGGATCCGGTGTGGTT
GTAACCATAGGGAAATATGTCACGCCTAATCATATGGATATAAATGGGAA
TGGAATTGAGCCTGATTACCGGAATCTTCCAGCTTGGAATGATGTCACCA
AGCATCTTTCACAGTGCACTATGCATCCACAAGGGTAAACTACAAGTCCT
TTCACTTCTTTGCCAAGCCCTATGGCTGCGACCTAAATGAAAGACGAGGC
ATTACTTGATCATTTATCAACAGCTCTCGTGTTCCATTTTCTGGCATACA
CAAGTTGCTCTTACAGCATTGACTACTGACAGTTGCAAGGATCAGACAAA
GAATTTGACAGATTTTAATGTTTTCGTTTGTTTTGTGATTCAACTCCAGC
TGCTTC
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