CX309020

Overview
NameCX309020
Unique NameCX309020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length325
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDKB_PONAB (Nucleoside diphosphate kinase B OS=Pongo abelii GN=NME2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.288e-14
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 1
Query:  130 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            +  +E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L+
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYTDLKDRPFFPGLV 65          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDKA1_BOVIN (Nucleoside diphosphate kinase A 1 OS=Bos taurus GN=NME1-1 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.288e-14
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TFI IKPDGVQRGL+GEII RFE+KGF L  +K M       ++HY DL  +PFF  L+
Sbjct:    5 ERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLV 65          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_HYPBU (Nucleoside diphosphate kinase OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=ndk PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.600e-14
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            +E+TF+MIKPDGV+RGLVGEII RFE+KG  +K LK+  + R  AEK YE    KPFF  L+
Sbjct:    3 VERTFVMIKPDGVKRGLVGEIIARFERKGLKIKALKMKWLTREEAEKLYEVHRGKPFFEDLV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_STAES (Nucleoside diphosphate kinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ndk PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.313e-14
Identity = 37/62 (59.68%), Postives = 42/62 (67.74%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+MIKPD VQR L+GEII R EKKG  L G K M V    AEKHY +   KPF+  LI
Sbjct:    1 MERTFLMIKPDAVQRNLIGEIISRIEKKGLKLVGGKFMQVPMELAEKHYSEHEGKPFYDKLI 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_STAEQ (Nucleoside diphosphate kinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ndk PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.313e-14
Identity = 37/62 (59.68%), Postives = 42/62 (67.74%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+MIKPD VQR L+GEII R EKKG  L G K M V    AEKHY +   KPF+  LI
Sbjct:    1 MERTFLMIKPDAVQRNLIGEIISRIEKKGLKLVGGKFMQVPMELAEKHYSEHEGKPFYDKLI 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_PROMT (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=ndk PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.313e-14
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            +E+TF+ IKPDGVQRGL+ EI+ RFE KGF L GLK +T  +  AEKHY     +PFF  L+
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_PROMA (Nucleoside diphosphate kinase OS=Prochlorococcus marinus GN=ndk PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.313e-14
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            +E+TF+ IKPDGVQRGLVGEI+ RFE+KGF L GLK +   +  AEKHY     +PFF  L+
Sbjct:    3 VERTFLAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLIPSKELAEKHYGVHKERPFFTGLV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_PROM1 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=ndk PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.313e-14
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            +E+TF+ IKPDGVQRGL+ EI+ RFE KGF L GLK +T  +  AEKHY     +PFF  L+
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDKB_RAT (Nucleoside diphosphate kinase B OS=Rattus norvegicus GN=Nme2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.313e-14
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 1
Query:  130 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            +  +E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L+
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLV 65          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDKB_MOUSE (Nucleoside diphosphate kinase B OS=Mus musculus GN=Nme2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.313e-14
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 1
Query:  130 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            +  +E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L+
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLV 65          
The following BLAST results are available for this feature:
BLAST of CX309020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
NDKB_PONAB4.288e-1453.85Nucleoside diphosphate kinase B OS=Pongo abelii GN... [more]
NDKA1_BOVIN4.288e-1457.38Nucleoside diphosphate kinase A 1 OS=Bos taurus GN... [more]
NDK_HYPBU5.600e-1459.68Nucleoside diphosphate kinase OS=Hyperthermus buty... [more]
NDK_STAES7.313e-1459.68Nucleoside diphosphate kinase OS=Staphylococcus ep... [more]
NDK_STAEQ7.313e-1459.68Nucleoside diphosphate kinase OS=Staphylococcus ep... [more]
NDK_PROMT7.313e-1456.45Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMA7.313e-1458.06Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM17.313e-1456.45Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDKB_RAT7.313e-1453.85Nucleoside diphosphate kinase B OS=Rattus norvegic... [more]
NDKB_MOUSE7.313e-1453.85Nucleoside diphosphate kinase B OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionC21007D09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309020 ID=CX309020; Name=CX309020; organism=Citrus clementina; type=EST; length=325bp
GCGGGGGATTAGGGTTACGATTCAGCGTTTCTTTACATATATACTCACTT
GCAAAACGGCAAGCTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCA
ATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACT
TTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAAT
CATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTA
TGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCG
AAGCCTTTCTTTGGTTCTCTGATTG
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