CX309020

Overview
NameCX309020
Unique NameCX309020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length325
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDKB_HUMAN (Nucleoside diphosphate kinase B OS=Homo sapiens GN=NME2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.313e-14
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 1
Query:  130 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            +  +E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L+
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLV 65          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDKA2_BOVIN (Nucleoside diphosphate kinase A 2 OS=Bos taurus GN=NME1-2 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.313e-14
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TFI IKPDGVQRGL+GEII RFE+KGF L  +K M       ++HY DL  +PFF  L+
Sbjct:    5 ERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLV 65          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SYNJA (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndk PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.552e-14
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TFI IKPDGVQRGLVG II R E +G+ L GLKL+ V +  AE HY +   +PFF  L+
Sbjct:    1 MERTFIAIKPDGVQRGLVGSIIQRLESRGYQLVGLKLVQVSQELAEAHYAEHRERPFFPGLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_STAS1 (Nucleoside diphosphate kinase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=ndk PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.552e-14
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+MIKPD VQR L+GEII R E+KG  L G K MTV +  AE+HY + + KPF+  LI
Sbjct:    1 MERTFLMIKPDAVQRNLIGEIISRIERKGLKLVGGKFMTVPQSLAEEHYAEHTDKPFYKHLI 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_FRASN (Nucleoside diphosphate kinase OS=Frankia sp. (strain EAN1pec) GN=ndk PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.552e-14
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+T I++KPDGV RGLVGE++ R E+KG  +  L+L T++R  AE HY + +SKPFFG L+
Sbjct:    4 ERTLILVKPDGVSRGLVGEVVGRIERKGLKIVALELRTLERSVAETHYGEHASKPFFGELV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_CORGL (Nucleoside diphosphate kinase OS=Corynebacterium glutamicum GN=ndk PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.552e-14
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+T I+IKPDGV  G VGEII R E+KG  L  L L   DR  AEKHYE+ + KPFFG L+
Sbjct:    3 ERTLILIKPDGVTNGHVGEIIARIERKGLKLAALDLRVADRETAEKHYEEHADKPFFGELV 63          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_CORGB (Nucleoside diphosphate kinase OS=Corynebacterium glutamicum (strain R) GN=ndk PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.552e-14
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+T I+IKPDGV  G VGEII R E+KG  L  L L   DR  AEKHYE+ + KPFFG L+
Sbjct:    3 ERTLILIKPDGVTNGHVGEIIARIERKGLKLAALDLRVADRETAEKHYEEHADKPFFGELV 63          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_COREF (Nucleoside diphosphate kinase OS=Corynebacterium efficiens GN=ndk PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.552e-14
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+T I+IKPDGV  G VGEII R E+KG  L  L L   DR  AEKHYE+ + KPFFG L+
Sbjct:    3 ERTLILIKPDGVTNGHVGEIIARIERKGLKLAALDLRVADRETAEKHYEEHADKPFFGELV 63          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_COLLI (Nucleoside diphosphate kinase OS=Columba livia PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.552e-14
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TFI IKPDGVQRGLVGEII RFE+KGF L G+K +       ++HY DL  +PF+  L+
Sbjct:    6 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGMKFVHASEELLKQHYIDLKDRPFYPGLV 66          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDKM_DICDI (Nucleoside diphosphate kinase, mitochondrial OS=Dictyostelium discoideum GN=ndkM PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.552e-14
Identity = 41/84 (48.81%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   73 SHVCCAISLNSQNKLVSLNLKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            S V C    N    LV L     E++FI IK    QR L+GEII RFEKKGF L G+K++      A KHYEDL+ KPFF  L+
Sbjct:   53 SFVACE---NKSVPLVGLPGTNQERSFIAIKVSSTQRRLIGEIIARFEKKGFKLVGIKILVPTPEHAAKHYEDLNKKPFFNGLV 133          
The following BLAST results are available for this feature:
BLAST of CX309020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
NDKB_HUMAN7.313e-1453.85Nucleoside diphosphate kinase B OS=Homo sapiens GN... [more]
NDKA2_BOVIN7.313e-1457.38Nucleoside diphosphate kinase A 2 OS=Bos taurus GN... [more]
NDK_SYNJA9.552e-1458.06Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_STAS19.552e-1458.06Nucleoside diphosphate kinase OS=Staphylococcus sa... [more]
NDK_FRASN9.552e-1454.10Nucleoside diphosphate kinase OS=Frankia sp. (stra... [more]
NDK_CORGL9.552e-1459.02Nucleoside diphosphate kinase OS=Corynebacterium g... [more]
NDK_CORGB9.552e-1459.02Nucleoside diphosphate kinase OS=Corynebacterium g... [more]
NDK_COREF9.552e-1459.02Nucleoside diphosphate kinase OS=Corynebacterium e... [more]
NDK_COLLI9.552e-1457.38Nucleoside diphosphate kinase OS=Columba livia PE=... [more]
NDKM_DICDI9.552e-1448.81Nucleoside diphosphate kinase, mitochondrial OS=Di... [more]

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Properties
Property NameValue
Genbank descriptionC21007D09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309020 ID=CX309020; Name=CX309020; organism=Citrus clementina; type=EST; length=325bp
GCGGGGGATTAGGGTTACGATTCAGCGTTTCTTTACATATATACTCACTT
GCAAAACGGCAAGCTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCA
ATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACT
TTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAAT
CATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTA
TGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCG
AAGCCTTTCTTTGGTTCTCTGATTG
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