CX309020

Overview
NameCX309020
Unique NameCX309020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length325
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDKB_PIG (Nucleoside diphosphate kinase B OS=Sus scrofa GN=NME2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.552e-14
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TFI +KPDGVQRGLVGEII RFE+KGF L  LK +       ++HY DL  +PFF  L+
Sbjct:    5 ERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGLV 65          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_THERP (Nucleoside diphosphate kinase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=ndk PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.247e-13
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+T I++KPD VQRGLVGE++ R E++G    GLKLM VDR  AE+HY +   KPF+  L+
Sbjct:    1 MERTLIIVKPDAVQRGLVGEVLRRLEQRGLRFVGLKLMKVDREVAERHYAEHRGKPFYEDLL 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SACEN (Nucleoside diphosphate kinase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=ndk PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.247e-13
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+T +++KPDGV+RGLVGE+I R E+KG  L  L+L  V++  AE+HY +   KPFFGSL+
Sbjct:    3 ERTLVLVKPDGVERGLVGEVIGRIERKGLKLVALELRQVEQQLAEQHYAEHDGKPFFGSLL 63          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_PYRAB (Nucleoside diphosphate kinase OS=Pyrococcus abyssi GN=ndk PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.247e-13
Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = 1
Query:  136 EMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E E+T ++IKPD V RGL+GEII RFEK+G  + G+K++ + +  AEKHY +   KPFF SL+
Sbjct:    5 EKERTLVIIKPDAVIRGLIGEIISRFEKRGLKIVGMKMIWISKELAEKHYAEHREKPFFKSLV 67          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_MYCSS (Nucleoside diphosphate kinase OS=Mycobacterium sp. (strain MCS) GN=ndk PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.247e-13
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+T ++IKPDGVQR LVGEI+ R E+KG +L  L+L TVD   A +HY +   KPFFGSL+
Sbjct:    3 ERTLVLIKPDGVQRRLVGEILGRIERKGLTLAALELKTVDDELARRHYAEHEGKPFFGSLL 63          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_METBF (Nucleoside diphosphate kinase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=ndk PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.247e-13
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            MEQT++M+KPDGVQRGLVGEII R EK+G  +  L++  +    A++HY + ++KPFF  L+
Sbjct:    1 MEQTYVMVKPDGVQRGLVGEIISRIEKRGLKIVALRMNVISEATAKEHYSEHAAKPFFPGLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDKB_BOVIN (Nucleoside diphosphate kinase B OS=Bos taurus GN=NME2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.247e-13
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L+
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLQASEELLKQHYIDLKDRPFFPGLV 65          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_RUBXD (Nucleoside diphosphate kinase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=ndk PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.629e-13
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            MEQT ++IK DGV+R L+GEII R E KG +++ LK+M V R  AE+HY +   KPFFG L+
Sbjct:    1 MEQTLVLIKGDGVRRRLIGEIIRRLENKGLAIRDLKMMRVSRELAEEHYAEHREKPFFGELV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_METBU (Nucleoside diphosphate kinase OS=Methanococcoides burtonii (strain DSM 6242) GN=ndk PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.629e-13
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+T++M+KPDGVQR LVGEI+ R EKKG  +  L++  +    A++HY++ S +PFFGSL+
Sbjct:    1 MERTYVMVKPDGVQRCLVGEIVSRIEKKGLKIAALRMNVMTEAAAKEHYKEHSERPFFGSLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_CORU7 (Nucleoside diphosphate kinase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=ndk PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.629e-13
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+T I+IKPDGV  G VGEII R E+KG  L  + L T DR  AEKHYE+   KPFFG L+
Sbjct:    3 ERTLILIKPDGVANGHVGEIISRIERKGLKLVEMDLRTADRATAEKHYEEHKDKPFFGELV 63          
The following BLAST results are available for this feature:
BLAST of CX309020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
NDKB_PIG9.552e-1457.38Nucleoside diphosphate kinase B OS=Sus scrofa GN=N... [more]
NDK_THERP1.247e-1354.84Nucleoside diphosphate kinase OS=Thermomicrobium r... [more]
NDK_SACEN1.247e-1354.10Nucleoside diphosphate kinase OS=Saccharopolyspora... [more]
NDK_PYRAB1.247e-1352.38Nucleoside diphosphate kinase OS=Pyrococcus abyssi... [more]
NDK_MYCSS1.247e-1357.38Nucleoside diphosphate kinase OS=Mycobacterium sp.... [more]
NDK_METBF1.247e-1351.61Nucleoside diphosphate kinase OS=Methanosarcina ba... [more]
NDKB_BOVIN1.247e-1357.38Nucleoside diphosphate kinase B OS=Bos taurus GN=N... [more]
NDK_RUBXD1.629e-1354.84Nucleoside diphosphate kinase OS=Rubrobacter xylan... [more]
NDK_METBU1.629e-1351.61Nucleoside diphosphate kinase OS=Methanococcoides ... [more]
NDK_CORU71.629e-1359.02Nucleoside diphosphate kinase OS=Corynebacterium u... [more]

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Properties
Property NameValue
Genbank descriptionC21007D09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309020 ID=CX309020; Name=CX309020; organism=Citrus clementina; type=EST; length=325bp
GCGGGGGATTAGGGTTACGATTCAGCGTTTCTTTACATATATACTCACTT
GCAAAACGGCAAGCTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCA
ATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACT
TTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAAT
CATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTA
TGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCG
AAGCCTTTCTTTGGTTCTCTGATTG
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