CX309020

Overview
NameCX309020
Unique NameCX309020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length325
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDKA_CANFA (Nucleoside diphosphate kinase A OS=Canis familiaris GN=NME1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.128e-13
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TFI IKPDGVQR LVGEII RFE+KGF L  +KL+       ++HY DL  +PFF  L+
Sbjct:    5 ERTFIAIKPDGVQRSLVGEIIKRFEQKGFRLIAMKLIQASEDLLKEHYIDLKDRPFFAGLV 65          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SULIY (Nucleoside diphosphate kinase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=ndk PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.779e-13
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            M++TF+MIKPDGV+RGL+GEII RFEK+G  +  LK++ + R  AEK Y++   K FF  L+
Sbjct:    3 MQRTFVMIKPDGVKRGLIGEIISRFEKRGLKIVSLKMVKMSRDIAEKLYDEHKGKSFFEELV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SULIN (Nucleoside diphosphate kinase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=ndk PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.779e-13
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            M++TF+MIKPDGV+RGL+GEII RFEK+G  +  LK++ + R  AEK Y++   K FF  L+
Sbjct:    3 MQRTFVMIKPDGVKRGLIGEIISRFEKRGLKIVSLKMVKMSRDIAEKLYDEHKGKSFFEELV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SULIM (Nucleoside diphosphate kinase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=ndk PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.779e-13
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            M++TF+MIKPDGV+RGL+GEII RFEK+G  +  LK++ + R  AEK Y++   K FF  L+
Sbjct:    3 MQRTFVMIKPDGVKRGLIGEIISRFEKRGLKIVSLKMVKMSRDIAEKLYDEHKGKSFFEELV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SULIL (Nucleoside diphosphate kinase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=ndk PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.779e-13
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            M++TF+MIKPDGV+RGL+GEII RFEK+G  +  LK++ + R  AEK Y++   K FF  L+
Sbjct:    3 MQRTFVMIKPDGVKRGLIGEIISRFEKRGLKIVSLKMVKMSRDIAEKLYDEHKGKSFFEELV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SULIK (Nucleoside diphosphate kinase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=ndk PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.779e-13
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            M++TF+MIKPDGV+RGL+GEII RFEK+G  +  LK++ + R  AEK Y++   K FF  L+
Sbjct:    3 MQRTFVMIKPDGVKRGLIGEIISRFEKRGLKIVSLKMVKMSRDIAEKLYDEHKGKSFFEELV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SULIA (Nucleoside diphosphate kinase OS=Sulfolobus islandicus (strain M.16.27) GN=ndk PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.779e-13
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            M++TF+MIKPDGV+RGL+GEII RFEK+G  +  LK++ + R  AEK Y++   K FF  L+
Sbjct:    3 MQRTFVMIKPDGVKRGLIGEIISRFEKRGLKIVSLKMVKMSRDIAEKLYDEHKGKSFFEELV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_STRA5 (Nucleoside diphosphate kinase OS=Streptococcus agalactiae serotype V GN=ndk PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.779e-13
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            MEQTF MIKPDGV+RG +GE+I R E++GFS+  L++   D    ++HY +L+ +PFF +L+
Sbjct:    1 MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRYADADILKRHYAELTDRPFFPTLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_STRA3 (Nucleoside diphosphate kinase OS=Streptococcus agalactiae serotype III GN=ndk PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.779e-13
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            MEQTF MIKPDGV+RG +GE+I R E++GFS+  L++   D    ++HY +L+ +PFF +L+
Sbjct:    1 MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRHADADILKRHYAELTDRPFFPTLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_STRA1 (Nucleoside diphosphate kinase OS=Streptococcus agalactiae serotype Ia GN=ndk PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.779e-13
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            MEQTF MIKPDGV+RG +GE+I R E++GFS+  L++   D    ++HY +L+ +PFF +L+
Sbjct:    1 MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRYADADILKRHYAELTDRPFFPTLV 62          
The following BLAST results are available for this feature:
BLAST of CX309020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
NDKA_CANFA2.128e-1357.38Nucleoside diphosphate kinase A OS=Canis familiari... [more]
NDK_SULIY2.779e-1353.23Nucleoside diphosphate kinase OS=Sulfolobus island... [more]
NDK_SULIN2.779e-1353.23Nucleoside diphosphate kinase OS=Sulfolobus island... [more]
NDK_SULIM2.779e-1353.23Nucleoside diphosphate kinase OS=Sulfolobus island... [more]
NDK_SULIL2.779e-1353.23Nucleoside diphosphate kinase OS=Sulfolobus island... [more]
NDK_SULIK2.779e-1353.23Nucleoside diphosphate kinase OS=Sulfolobus island... [more]
NDK_SULIA2.779e-1353.23Nucleoside diphosphate kinase OS=Sulfolobus island... [more]
NDK_STRA52.779e-1350.00Nucleoside diphosphate kinase OS=Streptococcus aga... [more]
NDK_STRA32.779e-1350.00Nucleoside diphosphate kinase OS=Streptococcus aga... [more]
NDK_STRA12.779e-1350.00Nucleoside diphosphate kinase OS=Streptococcus aga... [more]

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Properties
Property NameValue
Genbank descriptionC21007D09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309020 ID=CX309020; Name=CX309020; organism=Citrus clementina; type=EST; length=325bp
GCGGGGGATTAGGGTTACGATTCAGCGTTTCTTTACATATATACTCACTT
GCAAAACGGCAAGCTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCA
ATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACT
TTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAAT
CATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTA
TGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCG
AAGCCTTTCTTTGGTTCTCTGATTG
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