CX309020

Overview
NameCX309020
Unique NameCX309020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length325
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_PROM3 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=ndk PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.779e-13
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            +E+TF+ IKPDGVQRGLVGEI+ RFE+KGF L GLK +   R  A +HY     +PFF  L+
Sbjct:    3 VERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLAPSRELAGEHYGVHRERPFFAGLV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_METMA (Nucleoside diphosphate kinase OS=Methanosarcina mazei GN=ndk PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.779e-13
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            MEQT++M+KPDGVQRGLVGE+I R EK+G  +  L++  +    A++HY + +++PFF SLI
Sbjct:    1 MEQTYVMVKPDGVQRGLVGEVISRIEKRGLKIVALRMNVIAEATAKEHYGEHAARPFFPSLI 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_METAC (Nucleoside diphosphate kinase OS=Methanosarcina acetivorans GN=ndk PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.779e-13
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            MEQT++M+KPDGVQRGLVGE+I R EK+G  +  L++  +    A++HY + +++PFF SLI
Sbjct:    1 MEQTYVMVKPDGVQRGLVGEVISRIEKRGLKILALRMNVIAEATAKEHYGEHAARPFFPSLI 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_HALSA (Nucleoside diphosphate kinase OS=Halobacterium salinarium GN=ndk PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.779e-13
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TF+M+KPDGVQRGL+G+I+ R E KG  + G K M +D   A +HY +   KPFF  L+
Sbjct:    6 ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLV 66          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_HALS3 (Nucleoside diphosphate kinase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=ndk PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.779e-13
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TF+M+KPDGVQRGL+G+I+ R E KG  + G K M +D   A +HY +   KPFF  L+
Sbjct:    6 ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLV 66          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_GINCI (Nucleoside diphosphate kinase (Fragment) OS=Ginglymostoma cirratum PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.779e-13
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TFI +KPDGVQR +VGE+I RFE+KGF L  +K +   +   EKHY +LS KPF+  LI
Sbjct:    4 ERTFIAVKPDGVQRCIVGEVIKRFEQKGFKLVAMKFLQAPKDLLEKHYCELSDKPFYPKLI 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SULAC (Nucleoside diphosphate kinase OS=Sulfolobus acidocaldarius GN=ndk PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.630e-13
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            +++TF+MIKPDGV+R LVGEII RFEK+GF++  LK++ +DR  AE+ Y++   K FF  LI
Sbjct:    3 LQRTFVMIKPDGVRRRLVGEIISRFEKRGFNILALKMVHMDRATAERLYQEHKGKGFFNELI 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_PROM9 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9312) GN=ndk PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.630e-13
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TFI IKPDGVQRG V EII RFEKKGF L GLK +   +  A+ HY     +PFFG L+
Sbjct:    4 ERTFIAIKPDGVQRGYVSEIIGRFEKKGFKLVGLKQLIPSKDLAQNHYGVHRERPFFGDLV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_PROM2 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9215) GN=ndk PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.630e-13
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TFI IKPDGVQRG V EII RFEKKGF L GLK +   +  A+ HY     +PFFG L+
Sbjct:    4 ERTFIAIKPDGVQRGYVAEIIGRFEKKGFKLVGLKQLIPSKDLAQNHYGVHRERPFFGDLV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_PROM0 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9301) GN=ndk PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.630e-13
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TFI IKPDGVQRG V EII RFEKKGF L GLK +   +  A+ HY     +PFFG L+
Sbjct:    4 ERTFIAIKPDGVQRGYVSEIIGRFEKKGFKLVGLKQLIPSKELAQNHYGVHRERPFFGDLV 64          
The following BLAST results are available for this feature:
BLAST of CX309020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
NDK_PROM32.779e-1356.45Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_METMA2.779e-1351.61Nucleoside diphosphate kinase OS=Methanosarcina ma... [more]
NDK_METAC2.779e-1351.61Nucleoside diphosphate kinase OS=Methanosarcina ac... [more]
NDK_HALSA2.779e-1350.82Nucleoside diphosphate kinase OS=Halobacterium sal... [more]
NDK_HALS32.779e-1350.82Nucleoside diphosphate kinase OS=Halobacterium sal... [more]
NDK_GINCI2.779e-1355.74Nucleoside diphosphate kinase (Fragment) OS=Gingly... [more]
NDK_SULAC3.630e-1354.84Nucleoside diphosphate kinase OS=Sulfolobus acidoc... [more]
NDK_PROM93.630e-1359.02Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM23.630e-1359.02Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM03.630e-1359.02Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21007D09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309020 ID=CX309020; Name=CX309020; organism=Citrus clementina; type=EST; length=325bp
GCGGGGGATTAGGGTTACGATTCAGCGTTTCTTTACATATATACTCACTT
GCAAAACGGCAAGCTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCA
ATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACT
TTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAAT
CATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTA
TGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCG
AAGCCTTTCTTTGGTTCTCTGATTG
back to top