CX309020

Overview
NameCX309020
Unique NameCX309020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length325
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_STAAB (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.740e-13
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLI 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_STAA9 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain JH9) GN=ndk PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.740e-13
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLI 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_STAA8 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain NCTC 8325) GN=ndk PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.740e-13
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLI 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_STAA3 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain USA300) GN=ndk PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.740e-13
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLI 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_STAA2 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain JH1) GN=ndk PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.740e-13
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLI 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_STAA1 (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=ndk PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.740e-13
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+MIKPD VQR L+GE+I R E+KG  L G KLM V    AE HY +   KPF+  LI
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLI 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_MYCA9 (Nucleoside diphosphate kinase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=ndk PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.740e-13
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+T ++IKPDGV+RGLVGE++ R E+KG +L  L+L  VD   A  HY + + KPFFGSL+
Sbjct:    3 ERTLVLIKPDGVRRGLVGEVLNRIERKGLTLAALELKNVDDATARAHYAEHAEKPFFGSLL 63          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_CHICK (Nucleoside diphosphate kinase OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.740e-13
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PF+  L+
Sbjct:    6 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFVHASEDLLKQHYIDLKDRPFYPGLV 66          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK3_HUMAN (Nucleoside diphosphate kinase 3 OS=Homo sapiens GN=NME3 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.740e-13
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TF+ +KPDGVQR LVGEI+ RFE+KGF L  LKL+        +HY +L  +PF+G L+
Sbjct:   22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLV 82          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_STRU0 (Nucleoside diphosphate kinase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=ndk PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.191e-13
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF MIKPDGV+RGL+GE++ R E++GF+L  L+L+T  R   ++HY  L  K F+  LI
Sbjct:    1 MEKTFFMIKPDGVRRGLIGEVLQRIERRGFTLDALQLVTPSREHLDEHYHQLKDKAFYPGLI 62          
The following BLAST results are available for this feature:
BLAST of CX309020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
NDK_STAAB4.740e-1356.45Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA94.740e-1356.45Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA84.740e-1356.45Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA34.740e-1356.45Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA24.740e-1356.45Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAA14.740e-1356.45Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_MYCA94.740e-1354.10Nucleoside diphosphate kinase OS=Mycobacterium abs... [more]
NDK_CHICK4.740e-1355.74Nucleoside diphosphate kinase OS=Gallus gallus PE=... [more]
NDK3_HUMAN4.740e-1352.46Nucleoside diphosphate kinase 3 OS=Homo sapiens GN... [more]
NDK_STRU06.191e-1351.61Nucleoside diphosphate kinase OS=Streptococcus ube... [more]

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Properties
Property NameValue
Genbank descriptionC21007D09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309020 ID=CX309020; Name=CX309020; organism=Citrus clementina; type=EST; length=325bp
GCGGGGGATTAGGGTTACGATTCAGCGTTTCTTTACATATATACTCACTT
GCAAAACGGCAAGCTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCA
ATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACT
TTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAAT
CATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTA
TGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCG
AAGCCTTTCTTTGGTTCTCTGATTG
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