CX309020

Overview
NameCX309020
Unique NameCX309020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length325
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_PROMS (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain AS9601) GN=ndk PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.191e-13
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TFI IKPDGVQRG V EI+ RFEKKGF L GLK +   +  A+ HY     +PFFG L+
Sbjct:    4 ERTFIAIKPDGVQRGYVSEILGRFEKKGFKLVGLKQLIPSKELAQNHYGVHRERPFFGDLV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_PROM4 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9211) GN=ndk PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.191e-13
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TF+ IKPDGVQRGLVGEI+ RFE+KGF L  LK +   R  AE+HY     +PFF  L+
Sbjct:    4 ERTFLAIKPDGVQRGLVGEILSRFERKGFKLIALKQLIPSRALAEQHYGVHRERPFFKGLV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_PICTO (Nucleoside diphosphate kinase OS=Picrophilus torridus GN=ndk PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.191e-13
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+  I++KPDGV+R L+GE+I RFE+KG ++K LK+M V R  AE HY     KPFF  L+
Sbjct:    1 MERCLILVKPDGVERNLIGEVISRFERKGLAIKALKMMRVTREQAEDHYSVHRLKPFFDDLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDKB_CANFA (Nucleoside diphosphate kinase B OS=Canis familiaris GN=NME2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.191e-13
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 1
Query:  130 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            +   E+TFI IKPDGVQRGLVG+I+ RFE+KGF L  +K +       ++HY DL  +PF+  L+
Sbjct:    1 MAHQERTFIAIKPDGVQRGLVGDIVKRFEQKGFRLVAMKFLRASEDLLKEHYIDLKDRPFYPGLV 65          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_YEAST (Nucleoside diphosphate kinase OS=Saccharomyces cerevisiae GN=YNK1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.086e-13
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 1
Query:  136 EMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            + E+TFI +KPDGVQRGLV +I+ RFEKKG+ L  +KL+  D    E+HY +   KPFF  ++
Sbjct:    4 QTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMV 66          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_SULSO (Nucleoside diphosphate kinase OS=Sulfolobus solfataricus GN=ndk PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.086e-13
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ++TF+MIKPDGV+RGL+GEII RFEK+G  +  LK++ + R  AEK YE+   K FF  L+
Sbjct:    4 QRTFVMIKPDGVKRGLIGEIISRFEKRGLKIVSLKMVKMSRDTAEKLYEEHKGKSFFEELV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_METLZ (Nucleoside diphosphate kinase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=ndk PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.086e-13
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFF 312
            ME+TF+MIKPDGVQRGLVGEI+ RFE KGF +   K   +     +KHYE+  +KPF+
Sbjct:    1 MERTFVMIKPDGVQRGLVGEILSRFENKGFKIVAGKFGVLAESIVDKHYEEHLAKPFY 58          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_HALWD (Nucleoside diphosphate kinase OS=Haloquadratum walsbyi (strain DSM 16790) GN=ndk PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.086e-13
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+TF+M+KPDGVQRGL+GEII RFE +G +L G K   +D   A  HY +   KPFF  L+
Sbjct:    9 ERTFVMVKPDGVQRGLIGEIISRFEDRGLTLVGGKFTRLDTEVARDHYGEHKDKPFFDDLV 69          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_CLOTH (Nucleoside diphosphate kinase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=ndk PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.086e-13
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+T +++KPD V+R LVGEII RFEK+ F++  LK+M +DR  A +HY  +  KPFF  +I
Sbjct:    1 MERTLVILKPDSVKRKLVGEIISRFEKRNFTILHLKMMNIDRELACEHYSHVKDKPFFNDMI 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_STAMF (Nucleoside diphosphate kinase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=ndk PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.056e-12
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+T ++IKPDGV+RGL+GEII RFE+KG  +K LK++ + R  AE+ Y     KPFF SLI
Sbjct:    4 ERTLVLIKPDGVRRGLIGEIISRFERKGLKIKALKMLRLTREKAEEFYSVHRGKPFFVSLI 64          
The following BLAST results are available for this feature:
BLAST of CX309020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
NDK_PROMS6.191e-1357.38Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM46.191e-1357.38Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PICTO6.191e-1353.23Nucleoside diphosphate kinase OS=Picrophilus torri... [more]
NDKB_CANFA6.191e-1349.23Nucleoside diphosphate kinase B OS=Canis familiari... [more]
NDK_YEAST8.086e-1350.79Nucleoside diphosphate kinase OS=Saccharomyces cer... [more]
NDK_SULSO8.086e-1354.10Nucleoside diphosphate kinase OS=Sulfolobus solfat... [more]
NDK_METLZ8.086e-1356.90Nucleoside diphosphate kinase OS=Methanocorpusculu... [more]
NDK_HALWD8.086e-1354.10Nucleoside diphosphate kinase OS=Haloquadratum wal... [more]
NDK_CLOTH8.086e-1351.61Nucleoside diphosphate kinase OS=Clostridium therm... [more]
NDK_STAMF1.056e-1255.74Nucleoside diphosphate kinase OS=Staphylothermus m... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21007D09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309020 ID=CX309020; Name=CX309020; organism=Citrus clementina; type=EST; length=325bp
GCGGGGGATTAGGGTTACGATTCAGCGTTTCTTTACATATATACTCACTT
GCAAAACGGCAAGCTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCA
ATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACT
TTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAAT
CATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTA
TGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCG
AAGCCTTTCTTTGGTTCTCTGATTG
back to top