CX309020

Overview
NameCX309020
Unique NameCX309020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length325
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_METS3 (Nucleoside diphosphate kinase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=ndk PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.056e-12
Identity = 31/62 (50.00%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ++++F+M+KPD VQR L+G+I+ RFE+KG  +  +KLM +D   A+ HY + + KPFFGSLI
Sbjct:    2 IQKSFVMMKPDAVQRRLMGKILSRFEEKGLQIVAVKLMQIDEDLAKTHYGEHADKPFFGSLI 63          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_METKA (Nucleoside diphosphate kinase OS=Methanopyrus kandleri GN=ndk PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.056e-12
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1
Query:  130 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            + E+++ F+MIKPDGV RGLVGE+I R E+KG  +  L++  +DR  AEK YE+   KPFF  LI
Sbjct:    1 MAEVQREFVMIKPDGVVRGLVGEVIRRLERKGLKIVALEMRQLDRETAEKLYEEHRDKPFFEDLI 65          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_DEIDV (Nucleoside diphosphate kinase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=ndk PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.056e-12
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF MIKPDGV+RGL  EI+ R  +KG+ + GLK M + R  AE HY +   +PFFG L+
Sbjct:    1 MERTFAMIKPDGVRRGLTPEILARIARKGYRVVGLKQMVIARETAENHYGEHRERPFFGELV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_THEFY (Nucleoside diphosphate kinase OS=Thermobifida fusca (strain YX) GN=ndk PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.379e-12
Identity = 30/62 (48.39%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+T ++IKPDGV+R ++GE+I R E+KG  +  ++L T+D   A+ HYE+   KPFF SL+
Sbjct:    1 MERTLVLIKPDGVRRNIIGEVISRIERKGLKIVAMELRTLDEETAKAHYEEHVEKPFFSSLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_MYCTU (Nucleoside diphosphate kinase OS=Mycobacterium tuberculosis GN=ndkA PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.379e-12
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+T ++IKPDG++R L+GEII R E+KG ++  L+L TV    A +HY +   KPFFGSL+
Sbjct:    3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLL 63          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_MYCTA (Nucleoside diphosphate kinase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ndk PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.379e-12
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+T ++IKPDG++R L+GEII R E+KG ++  L+L TV    A +HY +   KPFFGSL+
Sbjct:    3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLL 63          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_MYCMM (Nucleoside diphosphate kinase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ndk PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.379e-12
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+T ++IKPDGVQR LVGEII R E+KG ++  L+L  V    A +HY +   KPFFGSL+
Sbjct:    3 ERTLVLIKPDGVQRQLVGEIISRIERKGLAIAALELRNVTEELASQHYAEHEGKPFFGSLL 63          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_MYCBT (Nucleoside diphosphate kinase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=ndk PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.379e-12
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+T ++IKPDG++R L+GEII R E+KG ++  L+L TV    A +HY +   KPFFGSL+
Sbjct:    3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLL 63          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_MYCBP (Nucleoside diphosphate kinase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=ndk PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.379e-12
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+T ++IKPDG++R L+GEII R E+KG ++  L+L TV    A +HY +   KPFFGSL+
Sbjct:    3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLL 63          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_MYCBO (Nucleoside diphosphate kinase OS=Mycobacterium bovis GN=ndk PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.379e-12
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E+T ++IKPDG++R L+GEII R E+KG ++  L+L TV    A +HY +   KPFFGSL+
Sbjct:    3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLL 63          
The following BLAST results are available for this feature:
BLAST of CX309020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
NDK_METS31.056e-1250.00Nucleoside diphosphate kinase OS=Methanobrevibacte... [more]
NDK_METKA1.056e-1252.31Nucleoside diphosphate kinase OS=Methanopyrus kand... [more]
NDK_DEIDV1.056e-1253.23Nucleoside diphosphate kinase OS=Deinococcus deser... [more]
NDK_THEFY1.379e-1248.39Nucleoside diphosphate kinase OS=Thermobifida fusc... [more]
NDK_MYCTU1.379e-1250.82Nucleoside diphosphate kinase OS=Mycobacterium tub... [more]
NDK_MYCTA1.379e-1250.82Nucleoside diphosphate kinase OS=Mycobacterium tub... [more]
NDK_MYCMM1.379e-1254.10Nucleoside diphosphate kinase OS=Mycobacterium mar... [more]
NDK_MYCBT1.379e-1250.82Nucleoside diphosphate kinase OS=Mycobacterium bov... [more]
NDK_MYCBP1.379e-1250.82Nucleoside diphosphate kinase OS=Mycobacterium bov... [more]
NDK_MYCBO1.379e-1250.82Nucleoside diphosphate kinase OS=Mycobacterium bov... [more]

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Properties
Property NameValue
Genbank descriptionC21007D09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309020 ID=CX309020; Name=CX309020; organism=Citrus clementina; type=EST; length=325bp
GCGGGGGATTAGGGTTACGATTCAGCGTTTCTTTACATATATACTCACTT
GCAAAACGGCAAGCTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCA
ATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACT
TTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAAT
CATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTA
TGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCG
AAGCCTTTCTTTGGTTCTCTGATTG
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