CX309020

Overview
NameCX309020
Unique NameCX309020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length325
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig180 contig Ccv1_Contig180:21..345. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_MICAN (Nucleoside diphosphate kinase OS=Microcystis aeruginosa (strain NIES-843) GN=ndk PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.507e-16
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+MIKPDGVQR LVGEII RFE KGF+L GLK+M V    AEKHY     +PFF SL+
Sbjct:    1 MERTFLMIKPDGVQRNLVGEIIQRFETKGFTLVGLKMMQVSSELAEKHYAVHKERPFFRSLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_BACSU (Nucleoside diphosphate kinase OS=Bacillus subtilis GN=ndk PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.507e-16
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TFIM+KPDGVQR L+G+I+ RFE+KG  L G KLM V    AEKHY +   KPFFG L+
Sbjct:    2 MEKTFIMVKPDGVQRQLIGDILSRFERKGLQLAGAKLMRVTEQMAEKHYAEHQGKPFFGELV 63          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_DESRM (Nucleoside diphosphate kinase OS=Desulfotomaculum reducens (strain MI-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.581e-16
Identity = 34/62 (54.84%), Postives = 50/62 (80.65%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+T++M+KPDGVQRGL+G+II +FE+KG+ + GLK+M + R  AE+HY + + KPFF  L+
Sbjct:    1 MERTYLMVKPDGVQRGLIGQIISKFEQKGYKIVGLKMMQISREVAERHYGEHAGKPFFNGLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_NEUCR (Nucleoside diphosphate kinase OS=Neurospora crassa GN=ndk-1 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.983e-16
Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = 1
Query:  130 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            +   EQTFI +KPDGVQRGLVG II RFE +GF L  +KL    +   EKHYEDL++KPFF  LI
Sbjct:    1 MSNQEQTFIAVKPDGVQRGLVGNIISRFENRGFKLVAMKLTQPGQAHLEKHYEDLNTKPFFAGLI 65          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_PYRHO (Nucleoside diphosphate kinase OS=Pyrococcus horikoshii GN=ndk PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.814e-16
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  130 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            + E E+T ++IKPD V RGL+GEII RFEKKG  + G+K++ +DR  AEKHYE+   KPFF +LI
Sbjct:    1 MSETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALI 65          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_EXIS2 (Nucleoside diphosphate kinase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.814e-16
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            MEQTF+M+KPDGV+RGL+GEII R E+KGF ++ +K+M V    A+ HY + + KPFFG L+
Sbjct:    1 MEQTFLMVKPDGVERGLIGEIIARIERKGFVIREMKMMQVTEELAQAHYAEHAEKPFFGELV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_CYAP4 (Nucleoside diphosphate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.814e-16
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+ +KPDGVQR LVGEII RFE KGF L GLKLM V +  AE+HY +   KPFF  L+
Sbjct:    1 MERTFLAVKPDGVQRALVGEIIRRFEAKGFKLVGLKLMNVSKDLAEQHYGEHKEKPFFPGLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_BACHK (Nucleoside diphosphate kinase OS=Bacillus thuringiensis subsp. konkukian GN=ndk PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.814e-16
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+M+KPDGVQR  +GEI+ RFEKKGF L G KLM V    A +HY + + KPFFG L+
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_BACCZ (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ZK / E33L) GN=ndk PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.814e-16
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+M+KPDGVQR  +GEI+ RFEKKGF L G KLM V    A +HY + + KPFFG L+
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_BACC1 (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ATCC 10987) GN=ndk PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.814e-16
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+M+KPDGVQR  +GEI+ RFEKKGF L G KLM V    A +HY + + KPFFG L+
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELV 62          
The following BLAST results are available for this feature:
BLAST of CX309020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
NDK_MICAN3.507e-1666.13Nucleoside diphosphate kinase OS=Microcystis aerug... [more]
NDK_BACSU3.507e-1661.29Nucleoside diphosphate kinase OS=Bacillus subtilis... [more]
NDK_DESRM4.581e-1654.84Nucleoside diphosphate kinase OS=Desulfotomaculum ... [more]
NDK_NEUCR5.983e-1660.00Nucleoside diphosphate kinase OS=Neurospora crassa... [more]
NDK_PYRHO7.814e-1656.92Nucleoside diphosphate kinase OS=Pyrococcus horiko... [more]
NDK_EXIS27.814e-1656.45Nucleoside diphosphate kinase OS=Exiguobacterium s... [more]
NDK_CYAP47.814e-1662.90Nucleoside diphosphate kinase OS=Cyanothece sp. (s... [more]
NDK_BACHK7.814e-1659.68Nucleoside diphosphate kinase OS=Bacillus thuringi... [more]
NDK_BACCZ7.814e-1659.68Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_BACC17.814e-1659.68Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]

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Properties
Property NameValue
Genbank descriptionC21007D09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309020 ID=CX309020; Name=CX309020; organism=Citrus clementina; type=EST; length=325bp
GCGGGGGATTAGGGTTACGATTCAGCGTTTCTTTACATATATACTCACTT
GCAAAACGGCAAGCTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCA
ATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACT
TTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAAT
CATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTA
TGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCG
AAGCCTTTCTTTGGTTCTCTGATTG
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