CX309033

Overview
NameCX309033
Unique NameCX309033
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length351
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX309033 vs. ExPASy Swiss-Prot
Match: PR4_PRUPE (Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.952e-12
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = -1 
Query:  202 GAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFANCND 351
            GA+  VRIVDQC+NGGLDLD  VF ++DTNG G  QG L V+Y+F +C D
Sbjct:   58 GAKVTVRIVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107
[Close]
BLAST of CX309033 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.605e-11
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = -1 
Query:  202 VRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFANCND 336
            VRIVDQC+NGGLDLD  +F ++DT+G GYQQG L V Y+F +C +
Sbjct:  149 VRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDCGN 193
The following BLAST results are available for this feature:
BLAST of CX309033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4_PRUPE8.952e-1262.00Pathogenesis-related protein PR-4 (Fragment) OS=Pr... [more]
HEVL_ARATH2.605e-1162.22Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]

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Properties
Property NameValue
Genbank descriptionC21007F01Rv AbsLeaSub1 Citrus clementina cDNA clone C21007F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309033 ID=CX309033; Name=CX309033; organism=Citrus clementina; type=EST; length=351bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTATAAAAAGGAAACTTTTATTAC
ATAACTGTAGTGCCCATGAGCACTTCTTGATACTTCATCAGAAGTTTTAT
TTTATTTATGAACTAAGTATATAGAGGGATAATTAATTAATAAATTAACC
CTATTACAGCATTAAGCTTCGATCGATCATGGAATTATAGATGGGGCTTT
AATCATTGCAGTTCGCAAACTCGTAGCTGACAGTAAGGAAGCCTTGTTGA
TAGCCTATTCCATTGGTGTCCAATTTCTTGAACACTCCTTCGTCCAAATC
TAAGCCTCCATTGGCACACTGATCAACAATTCTCACAATTTGTTGGGCTC
C
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