CX309041

Overview
NameCX309041
Unique NameCX309041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length300
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6239 contig Ccv1_Contig6239:394..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: MRP2_RABIT (Canalicular multispecific organic anion transporter 1 OS=Oryctolagus cuniculus GN=ABCC2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.981e-19
Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = -3
Query:    2 GWTILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 298
            G  I +DG++I +  + DLRG+  ++PQ P LF GSLR NLDPF+   D +IW  LE  H+K  V  +  GL   V E+  + S+GQRQL+CL RALL+ S
Sbjct: 1353 GGHITIDGIDIASIGLHDLRGKLTIIPQDPVLFSGSLRMNLDPFNNYSDEEIWRALELAHLKSFVAGLQHGLSREVSEAEDNLSIGQRQLLCLGRALLRKS 1453          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: MRP2_RAT (Canalicular multispecific organic anion transporter 1 OS=Rattus norvegicus GN=Abcc2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.587e-19
Identity = 45/101 (44.55%), Postives = 66/101 (65.35%), Query Frame = -3
Query:    2 GWTILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGISFSVGQRQLICLARALLKSS 298
            G  I++DG+++ +  + DLR R  ++PQ P LF GSLR NLDPF+   D ++W  LE  H++  V    +GL + V E G + S+GQRQL+CL RA+L+ S
Sbjct: 1351 GGQIIIDGIDVASIGLHDLRERLTIIPQDPILFSGSLRMNLDPFNKYSDEEVWRALELAHLRSFVSGLQLGLLSEVTEGGDNLSIGQRQLLCLGRAVLRKS 1451          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: MRP1_HUMAN (Multidrug resistance-associated protein 1 OS=Homo sapiens GN=ABCC1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.587e-19
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I++DG+NI    + DLR +  ++PQ P LF GSLR NLDPF    D ++W+ LE  H+K+ V A+   L+    E G + SVGQRQL+CLARALL+ +
Sbjct: 1351 IIIDGINIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWTSLELAHLKDFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKT 1448          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: MRP5_RAT (Multidrug resistance-associated protein 5 OS=Rattus norvegicus GN=Abcc5 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.379e-19
Identity = 45/99 (45.45%), Postives = 68/99 (68.69%), Query Frame = -3
Query:    8 GWTILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLK 298
            G  I +DG+ I +  + DLR +  ++PQ P LF G++R NLDPF+   + +IW  LE+ H+KE +    + LE+ V E+G +FSVG+RQL+C+ARALL+
Sbjct: 1247 GGCIKIDGVRISDIGLADLRSKLTIIPQEPVLFSGTVRSNLDPFNQYTEEQIWDALERTHMKECIAQLPLKLESEVMENGDNFSVGERQLLCIARALLR 1345          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: MRP5_HUMAN (Multidrug resistance-associated protein 5 OS=Homo sapiens GN=ABCC5 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.379e-19
Identity = 45/99 (45.45%), Postives = 69/99 (69.70%), Query Frame = -3
Query:    8 GWTILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLK 298
            G  I +DG+ I +  + DLR + +++PQ P LF G++R NLDPF+   + +IW  LE+ H+KE +    + LE+ V E+G +FSVG+RQL+C+ARALL+
Sbjct: 1248 GGCIKIDGVRISDIGLADLRSKLSIIPQEPVLFSGTVRSNLDPFNQYTEDQIWDALERTHMKECIAQLPLKLESEVMENGDNFSVGERQLLCIARALLR 1346          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: ABCC8_DICDI (ABC transporter C family member 8 OS=Dictyostelium discoideum GN=abcC8 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.379e-19
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = -3
Query:    2 TILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 292
            TI +DG++I    +  LR R A++PQ P LF GS+R NLDPF   DD +IW  +E  H+ + ++ +  GL+  V++ G +FSVGQRQL+ + RALLK +
Sbjct: 1401 TIEIDGIDITELGLNPLRSRMAIIPQDPVLFAGSVRYNLDPFDQYDDHEIWEAIENAHLLKAIKDLDGGLDAMVQDGGDNFSVGQRQLLVIGRALLKKA 1499          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: AB3C_ARATH (ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.379e-19
Identity = 45/98 (45.92%), Postives = 67/98 (68.37%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLETFVKESGISFSVGQRQLICLARALLKSS 289
            I +DG+NI+   + DLR R +++PQ P +FEG++R NLDP     D +IW  L+KC + +EV  +   L++ V E+G ++S+GQRQL+CL R LLK S
Sbjct: 1327 IRIDGVNILTIGLHDLRLRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQIWEALDKCQLGDEVRKKEQKLDSSVSENGDNWSMGQRQLVCLGRVLLKRS 1424          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: MRP1_CHICK (Multidrug resistance-associated protein 1 OS=Gallus gallus GN=ABCC1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.413e-19
Identity = 48/98 (48.98%), Postives = 62/98 (63.27%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I++DG+NI    + DLR +  ++PQ P LF GSLR NLDPF  + D  IW  LE  H+K  V ++   L     E G + SVGQRQL+CLARALL+ S
Sbjct: 1345 IIIDGINIAKIGLHDLRFKITIIPQDPILFSGSLRMNLDPFDQHSDEDIWRSLELAHLKNFVSSLPDKLNHECSEGGENLSVGQRQLVCLARALLRKS 1442          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: MRP3_RAT (Canalicular multispecific organic anion transporter 2 OS=Rattus norvegicus GN=Abcc3 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.527e-19
Identity = 47/98 (47.96%), Postives = 61/98 (62.24%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLETFVKESGISFSVGQRQLICLARALLKSS 289
            I +DGLN+ +  + DLR +  ++PQ P LF G+LR NLDPF    D  IW  LE  H+   V  +  GL+    E G + SVGQRQL+CLARALL+ S
Sbjct: 1342 IFIDGLNVAHIGLHDLRSQLTIIPQDPILFSGTLRMNLDPFGRYSDEDIWRTLELSHLSAFVSSQPTGLDFQCSEGGDNLSVGQRQLVCLARALLRKS 1439          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: MRP1_MACFA (Multidrug resistance-associated protein 1 OS=Macaca fascicularis GN=ABCC1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.527e-19
Identity = 47/98 (47.96%), Postives = 64/98 (65.31%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I++DG+NI    + DLR +  ++PQ P LF GSLR NLDPF    D ++W+ LE  H+K  V A+   L+    E G + SVGQRQL+CLARALL+ +
Sbjct: 1351 IIIDGINIARIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWTSLELAHLKGFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKT 1448          
The following BLAST results are available for this feature:
BLAST of CX309041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
MRP2_RABIT1.981e-1947.52Canalicular multispecific organic anion transporte... [more]
MRP2_RAT2.587e-1944.55Canalicular multispecific organic anion transporte... [more]
MRP1_HUMAN2.587e-1947.96Multidrug resistance-associated protein 1 OS=Homo ... [more]
MRP5_RAT3.379e-1945.45Multidrug resistance-associated protein 5 OS=Rattu... [more]
MRP5_HUMAN3.379e-1945.45Multidrug resistance-associated protein 5 OS=Homo ... [more]
ABCC8_DICDI3.379e-1945.45ABC transporter C family member 8 OS=Dictyostelium... [more]
AB3C_ARATH3.379e-1945.92ABC transporter C family member 3 OS=Arabidopsis t... [more]
MRP1_CHICK4.413e-1948.98Multidrug resistance-associated protein 1 OS=Gallu... [more]
MRP3_RAT7.527e-1947.96Canalicular multispecific organic anion transporte... [more]
MRP1_MACFA7.527e-1947.96Multidrug resistance-associated protein 1 OS=Macac... [more]

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Properties
Property NameValue
Genbank descriptionC21007F11Rv AbsLeaSub1 Citrus clementina cDNA clone C21007F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309041 ID=CX309041; Name=CX309041; organism=Citrus clementina; type=EST; length=300bp
TAGAAGACTTGAGAAGAGCACGTGCAAGACATATAAGCTGCCTTTGCCCA
ACAGAAAATGAAATCCCAGATTCCTTCACAAACGTCTCCAGTCCCACTGC
TTCTACTTCCTCTTTGACATGGCATTTCTCCAAAACACTCCAGATTTTTA
AGTCATCATTCATGTGAAATGGGTCTAAATTATCCCTTAAAGACCCCTCA
AACAAGAAGGGGCTCTGTGGAACAACAGCAAACCGTCCCCGGAGATCTCT
CACAGGAGTATTGATTATGTTGAGTCCATCCACCAAAATTGTCCACCCCG
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