CX309041

Overview
NameCX309041
Unique NameCX309041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length300
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6239 contig Ccv1_Contig6239:394..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: ABCCD_DICDI (ABC transporter C family member 13 OS=Dictyostelium discoideum GN=abcC13 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.527e-19
Identity = 43/99 (43.43%), Postives = 66/99 (66.67%), Query Frame = -3
Query:    2 TILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGISFSVGQRQLICLARALLKSS 292
            +IL+DG++I    + DLR    +VPQ PF+F G++R N+DPF+   D +IW  LEK  +K  + +  + LET ++E G   S GQ+QL+CL+R +LK+S
Sbjct: 1160 SILIDGIDISKIGLHDLRSSLGIVPQDPFIFSGTIRLNIDPFNKYTDSEIWVALEKVKLKSTISSMPLKLETMIEEGGDGLSFGQKQLLCLSRTILKNS 1258          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: MRP7_MOUSE (Multidrug resistance-associated protein 7 OS=Mus musculus GN=Abcc10 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.284e-18
Identity = 43/94 (45.74%), Postives = 66/94 (70.21%), Query Frame = -3
Query:   11 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALL 289
            +L+D ++     + +LR + AV+PQ PFLF G++R+NLDP  +++D  +W  LE+CH+ E   A+ GL+  + E G + S+GQRQL+CLARALL
Sbjct: 1313 VLLDNVDTSQLELAELRSQLAVIPQEPFLFSGTIRENLDPQGLHEDRALWQALEQCHLSEVAVAMGGLDGELGERGQNLSLGQRQLLCLARALL 1406          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: MRP7_HUMAN (Multidrug resistance-associated protein 7 OS=Homo sapiens GN=ABCC10 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.284e-18
Identity = 42/94 (44.68%), Postives = 66/94 (70.21%), Query Frame = -3
Query:   11 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALL 289
            +L+DG++     +  LR + A++PQ PFLF G++R+NLDP  ++ D  +W  L++CH+ E + ++ GL+  + E G S S+GQRQL+CLARALL
Sbjct: 1304 VLLDGVDTSQLELAQLRSQLAIIPQEPFLFSGTVRENLDPQGLHKDRALWQALKQCHLSEVITSMGGLDGELGEGGRSLSLGQRQLLCLARALL 1397          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: AB11C_ARATH (ABC transporter C family member 11 OS=Arabidopsis thaliana GN=ABCC11 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.677e-18
Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSS 289
            IL+D  ++    + DLR   +++PQSP LF G++R N+DPF  ++D  +W  LE+ H+K+ ++    GL+  V E G +FSVGQRQL+ LARALL+ S
Sbjct: 1293 ILIDDYDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: MRP3_MOUSE (Canalicular multispecific organic anion transporter 2 OS=Mus musculus GN=Abcc3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.190e-18
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLETFVKESGISFSVGQRQLICLARALLKSS 289
            I++DGLN+ +  + DLR +  ++PQ P LF G+LR NLDPF    +  IW  LE  H+   V  +  GL+    E G + SVGQRQL+CLARALL+ S
Sbjct: 1343 IVIDGLNVAHIGLHDLRSQLTIIPQDPILFSGTLRMNLDPFGRYSEEDIWRALELSHLNTFVSSQPAGLDFQCAEGGDNLSVGQRQLVCLARALLRKS 1440          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: ABCC1_DICDI (ABC transporter C family member 1 OS=Dictyostelium discoideum GN=abcC1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.860e-18
Identity = 42/99 (42.42%), Postives = 66/99 (66.67%), Query Frame = -3
Query:    2 TILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGISFSVGQRQLICLARALLKSS 292
            +IL+DG++I    + +LR    +VPQ PF+F G++R N+DPF+   D +IW  LEK  +K  + +  + LET ++E G   S GQ+QL+CL+R +LK+S
Sbjct: 1173 SILIDGVDISKIGLHELRSSLGIVPQDPFIFSGTIRLNIDPFNKYTDSEIWVALEKVKLKSTISSMPLKLETMIEEGGDGLSFGQKQLLCLSRTILKNS 1271          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: ABCCC_DICDI (ABC transporter C family member 12 OS=Dictyostelium discoideum GN=abcC12 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.736e-18
Identity = 46/97 (47.42%), Postives = 67/97 (69.07%), Query Frame = -3
Query:    8 TILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLK 292
            +I +DG NI    ++DLR   A++PQ P LF G+LR+NLDPF+   D ++WS+L+   + +  ++   GL + V E+G +FSVGQRQLI LARALL+
Sbjct: 1104 SISIDGENIAKFGLKDLRRNLAIIPQDPVLFSGTLRENLDPFNECPDHELWSILDDIQLSKVFKSTEEGLNSKVTENGENFSVGQRQLIVLARALLR 1200          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: MRP1_RAT (Multidrug resistance-associated protein 1 OS=Rattus norvegicus GN=Abcc1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.879e-18
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I++DG+NI    + +LR +  ++PQ P LF GSLR NLDPF    D ++W  LE  H+K  V A+   L     E G + SVGQRQL+CLARALL+ +
Sbjct: 1352 IIIDGINIAKIGLHNLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWMALELAHLKGFVSALPDKLNHECAEGGENLSVGQRQLVCLARALLRKT 1449          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: ABCC2_DICDI (ABC transporter C family member 2 OS=Dictyostelium discoideum GN=abcC2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.879e-18
Identity = 42/99 (42.42%), Postives = 68/99 (68.69%), Query Frame = -3
Query:    2 TILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGISFSVGQRQLICLARALLKSS 292
            +I +DG++I    + +LR    +VPQ PF+F GS+R N+DPF+   D +IW+ LEK  +K+ + +  + LE+ V+E+G   S GQ+QL+CL+R +LK+S
Sbjct: 1194 SIFIDGVDISKVGLHELRDALGIVPQDPFIFSGSIRMNIDPFNKYTDDEIWTALEKVKLKDAISSMPLKLESGVQENGDGLSFGQKQLLCLSRTILKNS 1292          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: MRP1_MOUSE (Multidrug resistance-associated protein 1 OS=Mus musculus GN=Abcc1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.372e-18
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I++DG+NI    + +LR +  ++PQ P LF GSLR NLDPF    D ++W  LE  H+K  V A+   L     E G + SVGQRQL+CLARALL+ +
Sbjct: 1348 IIIDGVNIAKIGLHNLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWMALELAHLKGFVSALPDKLNHECAEGGENLSVGQRQLVCLARALLRKT 1445          
The following BLAST results are available for this feature:
BLAST of CX309041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
ABCCD_DICDI7.527e-1943.43ABC transporter C family member 13 OS=Dictyosteliu... [more]
MRP7_MOUSE1.284e-1845.74Multidrug resistance-associated protein 7 OS=Mus m... [more]
MRP7_HUMAN1.284e-1844.68Multidrug resistance-associated protein 7 OS=Homo ... [more]
AB11C_ARATH1.677e-1844.90ABC transporter C family member 11 OS=Arabidopsis ... [more]
MRP3_MOUSE2.190e-1846.94Canalicular multispecific organic anion transporte... [more]
ABCC1_DICDI2.860e-1842.42ABC transporter C family member 1 OS=Dictyostelium... [more]
ABCCC_DICDI3.736e-1847.42ABC transporter C family member 12 OS=Dictyosteliu... [more]
MRP1_RAT4.879e-1846.94Multidrug resistance-associated protein 1 OS=Rattu... [more]
ABCC2_DICDI4.879e-1842.42ABC transporter C family member 2 OS=Dictyostelium... [more]
MRP1_MOUSE6.372e-1846.94Multidrug resistance-associated protein 1 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionC21007F11Rv AbsLeaSub1 Citrus clementina cDNA clone C21007F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309041 ID=CX309041; Name=CX309041; organism=Citrus clementina; type=EST; length=300bp
TAGAAGACTTGAGAAGAGCACGTGCAAGACATATAAGCTGCCTTTGCCCA
ACAGAAAATGAAATCCCAGATTCCTTCACAAACGTCTCCAGTCCCACTGC
TTCTACTTCCTCTTTGACATGGCATTTCTCCAAAACACTCCAGATTTTTA
AGTCATCATTCATGTGAAATGGGTCTAAATTATCCCTTAAAGACCCCTCA
AACAAGAAGGGGCTCTGTGGAACAACAGCAAACCGTCCCCGGAGATCTCT
CACAGGAGTATTGATTATGTTGAGTCCATCCACCAAAATTGTCCACCCCG
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