CX309041

Overview
NameCX309041
Unique NameCX309041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length300
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6239 contig Ccv1_Contig6239:394..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: MRP1_CANFA (Multidrug resistance-associated protein 1 OS=Canis familiaris GN=ABCC1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.372e-18
Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I++D +NI    + DLR +  ++PQ P LF GSLR NLDPF    D ++W+ LE  H+K+ V  +   L     E G + SVGQRQL+CLARALL+ +
Sbjct: 1351 IIIDDINIAKIGLHDLRVKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWTSLELAHLKDFVSGLPDKLNQECAEGGENLSVGQRQLVCLARALLRKT 1448          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: AB9C_ARATH (ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.372e-18
Identity = 43/99 (43.43%), Postives = 64/99 (64.65%), Query Frame = -3
Query:    2 TILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG--LETFVKESGISFSVGQRQLICLARALLKSS 292
            TI++D ++I    + DLR R  ++PQ P LF+G++R NLDP     D +IW  ++KC + + + A    L+  V E+G ++SVGQRQL+CL R LLK S
Sbjct: 1296 TIVIDNVDITKIGLHDLRSRLGIIPQDPALFDGTIRLNLDPLAQYTDHEIWEAIDKCQLGDVIRAKDERLDATVVENGENWSVGQRQLVCLGRVLLKKS 1394          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: MRP3_HUMAN (Canalicular multispecific organic anion transporter 2 OS=Homo sapiens GN=ABCC3 PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 8.322e-18
Identity = 46/98 (46.94%), Postives = 61/98 (62.24%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLETFVKESGISFSVGQRQLICLARALLKSS 289
            I +DGLN+ +  + DLR +  ++PQ P LF G+LR NLDPF    +  IW  LE  H+   V  +  GL+    E G + SVGQRQL+CLARALL+ S
Sbjct: 1347 IRIDGLNVADIGLHDLRSQLTIIPQDPILFSGTLRMNLDPFGSYSEEDIWWALELSHLHTFVSSQPAGLDFQCSEGGENLSVGQRQLVCLARALLRKS 1444          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: MRP1_BOVIN (Multidrug resistance-associated protein 1 OS=Bos taurus GN=ABCC1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.322e-18
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I++D +NI    + DLR +  ++PQ P LF GSLR NLDPF    D ++W+ LE  H+K  V A+   L     E G + SVGQRQL+CLARALL+ +
Sbjct: 1350 IIIDDINIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWTSLELAHLKGFVSALPDKLNHECAEGGENLSVGQRQLVCLARALLRKT 1447          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: ABCCB_HUMAN (ATP-binding cassette transporter sub-family C member 11 OS=Homo sapiens GN=ABCC11 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.087e-17
Identity = 43/98 (43.88%), Postives = 67/98 (68.37%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            IL+DG++I +  + DLR + +V+PQ P L  G++R NLDPF  + D +IW  LE+  + + +      L T V E+G +FSVG+RQL+C+ARA+L++S
Sbjct: 1199 ILIDGVDICSIGLEDLRSKLSVIPQDPVLLSGTIRFNLDPFDRHTDQQIWDALERTFLTKAISKFPKKLHTDVVENGGNFSVGERQLLCIARAVLRNS 1296          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: MRP4_HUMAN (Multidrug resistance-associated protein 4 OS=Homo sapiens GN=ABCC4 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.420e-17
Identity = 41/98 (41.84%), Postives = 68/98 (69.39%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I +D +      + DLR + +++PQ P LF G++R NLDPF+ + D ++W+ L++  +KE +E +   ++T + ESG +FSVGQRQL+CLARA+L+ +
Sbjct: 1098 IWIDKILTTEIGLHDLRKKMSIIPQEPVLFTGTMRKNLDPFNEHTDEELWNALQEVQLKETIEDLPGKMDTELAESGSNFSVGQRQLVCLARAILRKN 1195          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: L259_DROME (Probable multidrug resistance-associated protein lethal(2)03659 OS=Drosophila melanogaster GN=l(2)03659 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.420e-17
Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = -3
Query:    2 TILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 292
            ++L+D  +     + DLR + +++PQ P LF G++R NLDPF    D K+W  LE+  +KE V  +  GL + + E G +FSVGQRQL+CLARA+L+ +
Sbjct: 1092 SVLIDTRDTRQMGLHDLRRQISIIPQEPVLFSGTMRYNLDPFDEYSDEKLWGCLEEVKLKEVVSDLPDGLASKISEGGTNFSVGQRQLVCLARAILREN 1190          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: AB2C_ARATH (ABC transporter C family member 2 OS=Arabidopsis thaliana GN=ABCC2 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.420e-17
Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLETFVKESGISFSVGQRQLICLARALLKSS 289
            IL+D  ++    + DLR    ++PQSP LF G++R NLDPF  ++D  +W  LE+ H+K+ +    +GL+  V E+G +FSVGQRQL+ L+RALL+ S
Sbjct: 1300 ILIDDCDVGKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFGEHNDADLWESLERAHLKDTIRRNPLGLDAEVSEAGENFSVGQRQLLSLSRALLRRS 1397          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: AB1C_ARATH (ABC transporter C family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.420e-17
Identity = 45/98 (45.92%), Postives = 66/98 (67.35%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLETFVKESGISFSVGQRQLICLARALLKSS 289
            IL+D  +I    + DLR    ++PQ+P LF G++R NLDPF  ++D  +W  LE+ H+K+ +    +GL+  V E+G +FSVGQRQL+ LARALL+ S
Sbjct: 1295 ILIDECDIGRFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFSEHNDADLWESLERAHLKDTIRRNPLGLDAEVTEAGENFSVGQRQLLSLARALLRRS 1392          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: ABCCA_DICDI (ABC transporter C family member 10 OS=Dictyostelium discoideum GN=abcC10 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.162e-17
Identity = 45/97 (46.39%), Postives = 67/97 (69.07%), Query Frame = -3
Query:    8 TILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLK 292
            +I +DG NI    ++DLR   A++PQ P LF G+LR+NLDPF+   +  ++S +E   +   V+++  GL++ V E+G +FSVGQRQLI LARALL+
Sbjct: 1110 SISIDGENIAKFGLKDLRRNLAIIPQDPVLFSGTLRENLDPFNERSEEDLFSTIEDIQMSAVVKSLEGGLDSKVTENGENFSVGQRQLIVLARALLR 1206          
The following BLAST results are available for this feature:
BLAST of CX309041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
MRP1_CANFA6.372e-1845.92Multidrug resistance-associated protein 1 OS=Canis... [more]
AB9C_ARATH6.372e-1843.43ABC transporter C family member 9 OS=Arabidopsis t... [more]
MRP3_HUMAN8.322e-1846.94Canalicular multispecific organic anion transporte... [more]
MRP1_BOVIN8.322e-1846.94Multidrug resistance-associated protein 1 OS=Bos t... [more]
ABCCB_HUMAN1.087e-1743.88ATP-binding cassette transporter sub-family C memb... [more]
MRP4_HUMAN1.420e-1741.84Multidrug resistance-associated protein 4 OS=Homo ... [more]
L259_DROME1.420e-1743.43Probable multidrug resistance-associated protein l... [more]
AB2C_ARATH1.420e-1744.90ABC transporter C family member 2 OS=Arabidopsis t... [more]
AB1C_ARATH1.420e-1745.92ABC transporter C family member 1 OS=Arabidopsis t... [more]
ABCCA_DICDI3.162e-1746.39ABC transporter C family member 10 OS=Dictyosteliu... [more]

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Properties
Property NameValue
Genbank descriptionC21007F11Rv AbsLeaSub1 Citrus clementina cDNA clone C21007F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309041 ID=CX309041; Name=CX309041; organism=Citrus clementina; type=EST; length=300bp
TAGAAGACTTGAGAAGAGCACGTGCAAGACATATAAGCTGCCTTTGCCCA
ACAGAAAATGAAATCCCAGATTCCTTCACAAACGTCTCCAGTCCCACTGC
TTCTACTTCCTCTTTGACATGGCATTTCTCCAAAACACTCCAGATTTTTA
AGTCATCATTCATGTGAAATGGGTCTAAATTATCCCTTAAAGACCCCTCA
AACAAGAAGGGGCTCTGTGGAACAACAGCAAACCGTCCCCGGAGATCTCT
CACAGGAGTATTGATTATGTTGAGTCCATCCACCAAAATTGTCCACCCCG
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