CX309046

Overview
NameCX309046
Unique NameCX309046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A_CRYPV (Eukaryotic initiation factor 4A OS=Cryptosporidium parvum GN=EIF4-A PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.166e-18
Identity = 40/82 (48.78%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDI--LNQVQARFEVDIKELP 246
            G+ R+L+ TDL+ RGID+++V++VINYD+P S +TY+HR+GR+GRFG KG++I FV   +D DI  L  ++  +   I+E+P
Sbjct:  319 GSSRVLITTDLLARGIDVQQVSLVINYDLPVSPETYIHRIGRSGRFGKKGVSINFV---TDDDIVCLRDIERHYNTQIEEMP 397          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A3_ARATH (Eukaryotic initiation factor 4A-3 OS=Arabidopsis thaliana GN=TIF4A-3 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.166e-18
Identity = 38/83 (45.78%), Postives = 62/83 (74.70%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ TDL+ RGID+++V++VIN+D+P   + YLHR+GR+GRFG KG+AI F++S  D  ++  +Q  + V ++ELP  +
Sbjct:  329 GSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTS-EDERMMADIQRFYNVVVEELPSNV 410          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A2_RAT (Eukaryotic initiation factor 4A-II OS=Rattus norvegicus GN=Eif4a2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.166e-18
Identity = 37/83 (44.58%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+   D  IL  ++  +   ++E+P  +
Sbjct:  322 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTE-EDKRILRDIETFYNTTVEEMPMNV 403          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A2_PONAB (Eukaryotic initiation factor 4A-II OS=Pongo abelii GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.166e-18
Identity = 37/83 (44.58%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+   D  IL  ++  +   ++E+P  +
Sbjct:  322 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTE-EDKRILRDIETFYNTTVEEMPMNV 403          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A2_MOUSE (Eukaryotic initiation factor 4A-II OS=Mus musculus GN=Eif4a2 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 7.166e-18
Identity = 37/83 (44.58%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+   D  IL  ++  +   ++E+P  +
Sbjct:  322 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTE-EDKRILRDIETFYNTTVEEMPMNV 403          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A2_MACFA (Eukaryotic initiation factor 4A-II OS=Macaca fascicularis GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.166e-18
Identity = 37/83 (44.58%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+   D  IL  ++  +   ++E+P  +
Sbjct:  323 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTE-EDKRILRDIETFYNTTVEEMPMNV 404          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A2_HUMAN (Eukaryotic initiation factor 4A-II OS=Homo sapiens GN=EIF4A2 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 7.166e-18
Identity = 37/83 (44.58%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+   D  IL  ++  +   ++E+P  +
Sbjct:  322 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTE-EDKRILRDIETFYNTTVEEMPMNV 403          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A2_CHICK (Eukaryotic initiation factor 4A-II OS=Gallus gallus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.166e-18
Identity = 37/83 (44.58%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+   D  IL  ++  +   ++E+P  +
Sbjct:  322 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTE-EDKRILRDIETFYNTTVEEMPMNV 403          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A2_BOVIN (Eukaryotic initiation factor 4A-II OS=Bos taurus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.166e-18
Identity = 37/83 (44.58%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+   D  IL  ++  +   ++E+P  +
Sbjct:  322 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTE-EDKRILRDIETFYNTTVEEMPMNV 403          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: FAL1_SCLS1 (ATP-dependent RNA helicase fal1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=fal1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.166e-18
Identity = 39/83 (46.99%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  313 GNSRVLISTDVWARGIDVQQVSLVINYDLPVNRENYIHRIGRSGRFGRKGVAINFVTS-EDVRILRDIELYYSTQIDEMPMNV 394          
The following BLAST results are available for this feature:
BLAST of CX309046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
IF4A_CRYPV7.166e-1848.78Eukaryotic initiation factor 4A OS=Cryptosporidium... [more]
IF4A3_ARATH7.166e-1845.78Eukaryotic initiation factor 4A-3 OS=Arabidopsis t... [more]
IF4A2_RAT7.166e-1844.58Eukaryotic initiation factor 4A-II OS=Rattus norve... [more]
IF4A2_PONAB7.166e-1844.58Eukaryotic initiation factor 4A-II OS=Pongo abelii... [more]
IF4A2_MOUSE7.166e-1844.58Eukaryotic initiation factor 4A-II OS=Mus musculus... [more]
IF4A2_MACFA7.166e-1844.58Eukaryotic initiation factor 4A-II OS=Macaca fasci... [more]
IF4A2_HUMAN7.166e-1844.58Eukaryotic initiation factor 4A-II OS=Homo sapiens... [more]
IF4A2_CHICK7.166e-1844.58Eukaryotic initiation factor 4A-II OS=Gallus gallu... [more]
IF4A2_BOVIN7.166e-1844.58Eukaryotic initiation factor 4A-II OS=Bos taurus G... [more]
FAL1_SCLS17.166e-1846.99ATP-dependent RNA helicase fal1 OS=Sclerotinia scl... [more]

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Properties
Property NameValue
Genbank descriptionC21007G04Rv AbsLeaSub1 Citrus clementina cDNA clone C21007G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309046 ID=CX309046; Name=CX309046; organism=Citrus clementina; type=EST; length=485bp
GCGGGGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGTTGGTAGGGG
AATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACATGCCAGATT
CTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGGTTTGGCACC
AAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTCCGATATTCT
CAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGCTTCCTGAGC
AGATTGATACATCTACATACATGCCATCATAGTGGAGATCTGTTCTCTGA
TGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAGGCCCTTTAT
GTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATATGTTGCCTTG
GAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGCTGCCTTTTC
TTGTTTTTGGGATTTGTAGCCTTTTAATACCTTCT
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