CX309046

Overview
NameCX309046
Unique NameCX309046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A1_MOUSE (Eukaryotic initiation factor 4A-I OS=Mus musculus GN=Eif4a1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.035e-16
Identity = 36/80 (45.00%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 246
            G+ R+L+ TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI  V+   D   L  ++  +   I+E+P
Sbjct:  321 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTE-EDKRTLRDIETFYNTSIEEMP 399          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A1_MACFA (Eukaryotic initiation factor 4A-I OS=Macaca fascicularis GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.035e-16
Identity = 36/80 (45.00%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 246
            G+ R+L+ TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI  V+   D   L  ++  +   I+E+P
Sbjct:  321 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTE-EDKRTLRDIETFYNTSIEEMP 399          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.035e-16
Identity = 36/80 (45.00%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 246
            G+ R+L+ TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI  V+   D   L  ++  +   I+E+P
Sbjct:  321 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTE-EDKRTLRDIETFYNTSIEEMP 399          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A1_BOVIN (Eukaryotic initiation factor 4A-I OS=Bos taurus GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.035e-16
Identity = 36/80 (45.00%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 246
            G+ R+L+ TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI  V+   D   L  ++  +   I+E+P
Sbjct:  321 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTE-EDKRTLRDIETFYNTSIEEMP 399          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DHH1_YARLI (ATP-dependent RNA helicase DHH1 OS=Yarrowia lipolytica GN=DHH1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.035e-16
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 273
            G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  G+AI  + + +D   L +++     +IK +P QID + Y+
Sbjct:  314 GTCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGIAINLI-NWNDRYNLYKIEQELGTEIKPIPAQIDKNLYV 401          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.351e-16
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 270
            G  R LV TDL  RGIDI+ VN+VIN+D P +A+TYLHRVGR+GRFG  GLA+  + +  D   L +++     +IK++P  ID + Y
Sbjct:  417 GACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLI-TYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 503          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.351e-16
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 270
            G  R LV TDL  RGIDI+ VN+VIN+D P +++TYLHRVGR+GRFG  GLA+  + +  D   L +++     +IK +P QID + Y
Sbjct:  433 GACRNLVCTDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRFGHLGLAVNLI-TYEDRFNLYRIEQELGTEIKTIPPQIDLAVY 519          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DDX6_XENTR (Probable ATP-dependent RNA helicase ddx6 OS=Xenopus tropicalis GN=ddx6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.351e-16
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   16 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 273
            R LV TDL  RGIDI+ VN+VIN+D P  A+TYLHR+GR+GRFG  GLAI  + +  D   L  ++ +   +IK +P  ID S Y+
Sbjct:  385 RNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSSIDKSLYV 469          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DDX6_MOUSE (Probable ATP-dependent RNA helicase DDX6 OS=Mus musculus GN=Ddx6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.351e-16
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   16 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 273
            R LV TDL  RGIDI+ VN+VIN+D P  A+TYLHR+GR+GRFG  GLAI  + +  D   L  ++ +   +IK +P  ID S Y+
Sbjct:  386 RNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYV 470          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DDX6_HUMAN (Probable ATP-dependent RNA helicase DDX6 OS=Homo sapiens GN=DDX6 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.351e-16
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   16 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 273
            R LV TDL  RGIDI+ VN+VIN+D P  A+TYLHR+GR+GRFG  GLAI  + +  D   L  ++ +   +IK +P  ID S Y+
Sbjct:  386 RNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYV 470          
The following BLAST results are available for this feature:
BLAST of CX309046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
IF4A1_MOUSE1.035e-1645.00Eukaryotic initiation factor 4A-I OS=Mus musculus ... [more]
IF4A1_MACFA1.035e-1645.00Eukaryotic initiation factor 4A-I OS=Macaca fascic... [more]
IF4A1_HUMAN1.035e-1645.00Eukaryotic initiation factor 4A-I OS=Homo sapiens ... [more]
IF4A1_BOVIN1.035e-1645.00Eukaryotic initiation factor 4A-I OS=Bos taurus GN... [more]
DHH1_YARLI1.035e-1647.19ATP-dependent RNA helicase DHH1 OS=Yarrowia lipoly... [more]
RH8_ARATH1.351e-1648.86DEAD-box ATP-dependent RNA helicase 8 OS=Arabidops... [more]
RH12_ORYSJ1.351e-1648.86DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sa... [more]
DDX6_XENTR1.351e-1650.00Probable ATP-dependent RNA helicase ddx6 OS=Xenopu... [more]
DDX6_MOUSE1.351e-1650.00Probable ATP-dependent RNA helicase DDX6 OS=Mus mu... [more]
DDX6_HUMAN1.351e-1650.00Probable ATP-dependent RNA helicase DDX6 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionC21007G04Rv AbsLeaSub1 Citrus clementina cDNA clone C21007G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309046 ID=CX309046; Name=CX309046; organism=Citrus clementina; type=EST; length=485bp
GCGGGGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGTTGGTAGGGG
AATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACATGCCAGATT
CTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGGTTTGGCACC
AAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTCCGATATTCT
CAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGCTTCCTGAGC
AGATTGATACATCTACATACATGCCATCATAGTGGAGATCTGTTCTCTGA
TGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAGGCCCTTTAT
GTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATATGTTGCCTTG
GAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGCTGCCTTTTC
TTGTTTTTGGGATTTGTAGCCTTTTAATACCTTCT
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