CX309046

Overview
NameCX309046
Unique NameCX309046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A1_PANTR (Eukaryotic initiation factor 4A-I OS=Pan troglodytes GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.011e-16
Identity = 35/80 (43.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 246
            G+ R+L+ TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+ I  V+   D   L  ++  +   I+E+P
Sbjct:  321 GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVTINMVTE-EDKRTLRDIETFYNTSIEEMP 399          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.011e-16
Identity = 35/80 (43.75%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 246
            G+ R+L++TD+  RGID+++V++VINYD+P+  + Y+HR+GR+GRFG KG+AI F++ A D   L +++  + + I  +P
Sbjct:  314 GHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKA-DLAKLREIEKFYSIKINPMP 392          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: FAL1_YEAS7 (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.011e-16
Identity = 35/80 (43.75%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 246
            G+ R+L++TD+  RGID+++V++VINYD+P+  + Y+HR+GR+GRFG KG+AI F++ A D   L +++  + + I  +P
Sbjct:  314 GHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKA-DLAKLREIEKFYSIKINPMP 392          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: FAL1_LODEL (ATP-dependent RNA helicase FAL1 OS=Lodderomyces elongisporus GN=FAL1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.011e-16
Identity = 36/84 (42.86%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 258
            GN R+L++TD+  RGID++++++VINYD+P   + Y+HR+GR+GRFG KG AI  ++  SD+  L  ++  +   IKE+P  ++
Sbjct:  314 GNSRVLISTDVWARGIDVQQISLVINYDLPLDKENYIHRIGRSGRFGRKGTAINLLTK-SDTIELKALEKYYSTKIKEMPSNVN 396          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DHH1_YEAST (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae GN=DHH1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.011e-16
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 273
            G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + + +D   L +++     +I  +P  ID S Y+
Sbjct:  332 GKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI-NWNDRFNLYKIEQELGTEIAAIPATIDKSLYV 419          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DHH1_YEAS7 (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.011e-16
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 273
            G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + + +D   L +++     +I  +P  ID S Y+
Sbjct:  332 GKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI-NWNDRFNLYKIEQELGTEIAAIPATIDKSLYV 419          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DHH1_CANGA (ATP-dependent RNA helicase DHH1 OS=Candida glabrata GN=DHH1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.011e-16
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 273
            G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + + +D   L +++     +I  +P  ID S Y+
Sbjct:  317 GKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI-NWNDRFNLYKIEQELGTEIAAIPATIDKSLYV 404          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DDX6_XENLA (ATP-dependent RNA helicase ddx6 OS=Xenopus laevis GN=ddx6 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.011e-16
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   16 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 273
            R LV TDL  RGIDI+ VN+VIN+D P  A+TYLHR+GR+GRFG  GLAI  + +  D   L  ++ +   +IK +P  ID + Y+
Sbjct:  385 RNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSSIDKNLYV 469          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: FAL1_YARLI (ATP-dependent RNA helicase FAL1 OS=Yarrowia lipolytica GN=FAL1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.932e-16
Identity = 35/83 (42.17%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G  R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI F ++  D   L  ++  +   I E+P  +
Sbjct:  312 GRSRVLISTDVWARGIDVQQVSLVINYDLPPNRENYIHRIGRSGRFGRKGVAINFATN-DDITTLRDIEQYYSTQIDEMPVNV 393          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.932e-16
Identity = 36/84 (42.86%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 258
            GN R+L++TD+  RGID+++V++VINYD+P   + Y+HR+GR+GRFG KG+AI  ++   D   L   +  +   I+E+P  I+
Sbjct:  314 GNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGVAINLITK-EDVATLRDFEKYYSTKIREMPMNIN 396          
The following BLAST results are available for this feature:
BLAST of CX309046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
IF4A1_PANTR3.011e-1643.75Eukaryotic initiation factor 4A-I OS=Pan troglodyt... [more]
FAL1_YEAST3.011e-1643.75ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_YEAS73.011e-1643.75ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_LODEL3.011e-1642.86ATP-dependent RNA helicase FAL1 OS=Lodderomyces el... [more]
DHH1_YEAST3.011e-1647.19ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DHH1_YEAS73.011e-1647.19ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DHH1_CANGA3.011e-1647.19ATP-dependent RNA helicase DHH1 OS=Candida glabrat... [more]
DDX6_XENLA3.011e-1648.84ATP-dependent RNA helicase ddx6 OS=Xenopus laevis ... [more]
FAL1_YARLI3.932e-1642.17ATP-dependent RNA helicase FAL1 OS=Yarrowia lipoly... [more]
FAL1_PICST3.932e-1642.86ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]

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Properties
Property NameValue
Genbank descriptionC21007G04Rv AbsLeaSub1 Citrus clementina cDNA clone C21007G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309046 ID=CX309046; Name=CX309046; organism=Citrus clementina; type=EST; length=485bp
GCGGGGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGTTGGTAGGGG
AATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACATGCCAGATT
CTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGGTTTGGCACC
AAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTCCGATATTCT
CAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGCTTCCTGAGC
AGATTGATACATCTACATACATGCCATCATAGTGGAGATCTGTTCTCTGA
TGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAGGCCCTTTAT
GTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATATGTTGCCTTG
GAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGCTGCCTTTTC
TTGTTTTTGGGATTTGTAGCCTTTTAATACCTTCT
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