CX309046

Overview
NameCX309046
Unique NameCX309046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: PRP5_CRYNE (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Cryptococcus neoformans GN=PRP5 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.233e-11
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDI 234
            G+  I+VAT +  RG+D++ + +VINYD P+  + Y+HR GR GR G KG  ITF++           Q RF VDI
Sbjct:  705 GDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFITPE---------QERFSVDI 771          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DRS1_KLULA (ATP-dependent RNA helicase DRS1 OS=Kluyveromyces lactis GN=DRS1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.233e-11
Identity = 28/56 (50.00%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 186
            +L+ TDL  RG+DI ++ +VIN+DMP + + YLHRVGR  R G +G ++TFV  +S
Sbjct:  534 VLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESS 589          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DBP8_VANPO (ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP8 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.233e-11
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   16 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTS 264
            R+L+ATD+  RG+DI  V +VINYD+P   DT++HR GR  R G  G AI+FV +  D   +  ++ R    + E  +  DT+
Sbjct:  306 RVLIATDVAARGLDIPTVELVINYDIPQDPDTFIHRSGRTARAGRSGDAISFV-TPRDVSRIEAIEERINKKMDECKKVHDTA 387          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RRP3_VANPO (ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11
Identity = 36/82 (43.90%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 252
            G + ILVATD+  RG+DI  V+IVINYD+P  + +Y+HRVGR  R G  G +I+ VS   D +++ +++   +V  K+LP++
Sbjct:  375 GRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ-YDLELILRIE---DVLGKKLPKE 452          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RRP3_KLULA (ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces lactis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11
Identity = 36/82 (43.90%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 252
            G + ILVATD+  RG+DI  V+IVINYD+P  + +Y+HRVGR  R G  G +I+ VS   D +++ +++   +V  K+LP++
Sbjct:  356 GKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ-YDLELILRIE---DVLGKKLPKE 433          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RRP3_COCIM (ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKE 240
            ++ ILVATD+  RG+DI  V++V+NYD+P  + TY+HRVGR  R G  G A + V+   D +I  +++A    ++ E
Sbjct:  338 SRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQ-YDVEIWQRIEAALGKELDE 413          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: ROK1_KLULA (ATP-dependent RNA helicase ROK1 OS=Kluyveromyces lactis GN=ROK1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 171
            G+   L+ TD++ RG+D + VN+VINYD+P SA  Y+HR+GR GR G  G AITF
Sbjct:  432 GDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHRIGRTGRGGRSGKAITF 486          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RHLB_PSEPK (ATP-dependent RNA helicase rhlB OS=Pseudomonas putida (strain KT2440) GN=rhlB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11
Identity = 36/81 (44.44%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIK-ELP 246
            G   +LVATD+ GRGI I+ ++ VIN+ +P+  D Y+HR+GR GR GT G++I+F +   DS  L  ++A     IK E+P
Sbjct:  306 GRITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISF-AGEDDSYQLPAIEALLGRKIKCEMP 385          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 186
            G   I+ ATD+  RG+D++ V  VINYD P S + Y+HR+GR GR G KG A TF + A+
Sbjct:  393 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVAN 452          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DBP8_YARLI (ATP-dependent RNA helicase DBP8 OS=Yarrowia lipolytica GN=DBP8 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   16 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 204
            R+LVATD+  RG+DI  V +VIN+D+P  AD Y+HRVGR  R G KG +++ V+    + + N
Sbjct:  301 RVLVATDVASRGLDIPTVEMVINFDLPADADDYIHRVGRTARAGRKGQSVSLVTERDVTRVTN 363          
The following BLAST results are available for this feature:
BLAST of CX309046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
PRP5_CRYNE2.233e-1143.42Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
DRS1_KLULA2.233e-1150.00ATP-dependent RNA helicase DRS1 OS=Kluyveromyces l... [more]
DBP8_VANPO2.233e-1140.96ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma... [more]
RRP3_VANPO2.916e-1143.90ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozym... [more]
RRP3_KLULA2.916e-1143.90ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces ... [more]
RRP3_COCIM2.916e-1141.56ATP-dependent rRNA helicase RRP3 OS=Coccidioides i... [more]
ROK1_KLULA2.916e-1154.55ATP-dependent RNA helicase ROK1 OS=Kluyveromyces l... [more]
RHLB_PSEPK2.916e-1144.44ATP-dependent RNA helicase rhlB OS=Pseudomonas put... [more]
RH20_ARATH2.916e-1150.00DEAD-box ATP-dependent RNA helicase 20 OS=Arabidop... [more]
DBP8_YARLI2.916e-1147.62ATP-dependent RNA helicase DBP8 OS=Yarrowia lipoly... [more]

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Properties
Property NameValue
Genbank descriptionC21007G04Rv AbsLeaSub1 Citrus clementina cDNA clone C21007G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309046 ID=CX309046; Name=CX309046; organism=Citrus clementina; type=EST; length=485bp
GCGGGGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGTTGGTAGGGG
AATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACATGCCAGATT
CTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGGTTTGGCACC
AAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTCCGATATTCT
CAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGCTTCCTGAGC
AGATTGATACATCTACATACATGCCATCATAGTGGAGATCTGTTCTCTGA
TGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAGGCCCTTTAT
GTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATATGTTGCCTTG
GAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGCTGCCTTTTC
TTGTTTTTGGGATTTGTAGCCTTTTAATACCTTCT
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