CX309046
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: PRP5_CRYNE (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Cryptococcus neoformans GN=PRP5 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.233e-11 Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDI 234 G+ I+VAT + RG+D++ + +VINYD P+ + Y+HR GR GR G KG ITF++ Q RF VDI Sbjct: 705 GDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFITPE---------QERFSVDI 771
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DRS1_KLULA (ATP-dependent RNA helicase DRS1 OS=Kluyveromyces lactis GN=DRS1 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.233e-11 Identity = 28/56 (50.00%), Postives = 41/56 (73.21%), Query Frame = 1 Query: 19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 186 +L+ TDL RG+DI ++ +VIN+DMP + + YLHRVGR R G +G ++TFV +S Sbjct: 534 VLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESS 589
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DBP8_VANPO (ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP8 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.233e-11 Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 16 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTS 264 R+L+ATD+ RG+DI V +VINYD+P DT++HR GR R G G AI+FV + D + ++ R + E + DT+ Sbjct: 306 RVLIATDVAARGLDIPTVELVINYDIPQDPDTFIHRSGRTARAGRSGDAISFV-TPRDVSRIEAIEERINKKMDECKKVHDTA 387
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RRP3_VANPO (ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RRP3 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11 Identity = 36/82 (43.90%), Postives = 56/82 (68.29%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 252 G + ILVATD+ RG+DI V+IVINYD+P + +Y+HRVGR R G G +I+ VS D +++ +++ +V K+LP++ Sbjct: 375 GRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ-YDLELILRIE---DVLGKKLPKE 452
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RRP3_KLULA (ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces lactis GN=RRP3 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11 Identity = 36/82 (43.90%), Postives = 56/82 (68.29%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 252 G + ILVATD+ RG+DI V+IVINYD+P + +Y+HRVGR R G G +I+ VS D +++ +++ +V K+LP++ Sbjct: 356 GKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ-YDLELILRIE---DVLGKKLPKE 433
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RRP3_COCIM (ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis GN=RRP3 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11 Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 1 Query: 10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKE 240 ++ ILVATD+ RG+DI V++V+NYD+P + TY+HRVGR R G G A + V+ D +I +++A ++ E Sbjct: 338 SRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQ-YDVEIWQRIEAALGKELDE 413
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: ROK1_KLULA (ATP-dependent RNA helicase ROK1 OS=Kluyveromyces lactis GN=ROK1 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11 Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 171 G+ L+ TD++ RG+D + VN+VINYD+P SA Y+HR+GR GR G G AITF Sbjct: 432 GDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQAYVHRIGRTGRGGRSGKAITF 486
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RHLB_PSEPK (ATP-dependent RNA helicase rhlB OS=Pseudomonas putida (strain KT2440) GN=rhlB PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11 Identity = 36/81 (44.44%), Postives = 53/81 (65.43%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIK-ELP 246 G +LVATD+ GRGI I+ ++ VIN+ +P+ D Y+HR+GR GR GT G++I+F + DS L ++A IK E+P Sbjct: 306 GRITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISF-AGEDDSYQLPAIEALLGRKIKCEMP 385
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11 Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 186 G I+ ATD+ RG+D++ V VINYD P S + Y+HR+GR GR G KG A TF + A+ Sbjct: 393 GKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVAN 452
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DBP8_YARLI (ATP-dependent RNA helicase DBP8 OS=Yarrowia lipolytica GN=DBP8 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.916e-11 Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1 Query: 16 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 204 R+LVATD+ RG+DI V +VIN+D+P AD Y+HRVGR R G KG +++ V+ + + N Sbjct: 301 RVLVATDVASRGLDIPTVEMVINFDLPADADDYIHRVGRTARAGRKGQSVSLVTERDVTRVTN 363 The following BLAST results are available for this feature:
BLAST of CX309046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 482
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Sequences
The
following sequences are available for this feature:
EST sequence >CX309046 ID=CX309046; Name=CX309046; organism=Citrus clementina; type=EST; length=485bpback to top |