CX309046

Overview
NameCX309046
Unique NameCX309046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: Y2004_STAAW (Probable DEAD-box ATP-dependent RNA helicase MW2004 OS=Staphylococcus aureus (strain MW2) GN=MW2004 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.809e-11
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 213
            ILVATD+  RG+DI  V+ V N+D+P   ++Y HR+GR GR G +G+A+TFV+   + D + Q++
Sbjct:  293 ILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPI-EMDYIRQIE 356          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: Y1985_STAAS (Probable DEAD-box ATP-dependent RNA helicase SAS1985 OS=Staphylococcus aureus (strain MSSA476) GN=SAS1985 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.809e-11
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 213
            ILVATD+  RG+DI  V+ V N+D+P   ++Y HR+GR GR G +G+A+TFV+   + D + Q++
Sbjct:  293 ILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPI-EMDYIRQIE 356          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: Y1965_STAAB (Probable DEAD-box ATP-dependent RNA helicase SAB1965c OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1965c PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.809e-11
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 213
            ILVATD+  RG+DI  V+ V N+D+P   ++Y HR+GR GR G +G+A+TFV+   + D + Q++
Sbjct:  293 ILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPI-EMDYIRQIE 356          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: Y1885_STAAN (Probable DEAD-box ATP-dependent RNA helicase SA1885 OS=Staphylococcus aureus (strain N315) GN=SA1885 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.809e-11
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 213
            ILVATD+  RG+DI  V+ V N+D+P   ++Y HR+GR GR G +G+A+TFV+   + D + Q++
Sbjct:  293 ILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPI-EMDYIRQIE 356          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: Y1688_STAEQ (Probable DEAD-box ATP-dependent RNA helicase SERP1688 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1688 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.809e-11
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 213
            ILVATD+  RG+DI  V+ V N+D+P   ++Y HR+GR GR G +G+A+TFV+   + D + Q++
Sbjct:  293 ILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPI-EMDYIRQIE 356          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: Y1679_STAES (Probable DEAD-box ATP-dependent RNA helicase SE_1679 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1679 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.809e-11
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 213
            ILVATD+  RG+DI  V+ V N+D+P   ++Y HR+GR GR G +G+A+TFV+   + D + Q++
Sbjct:  293 ILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPI-EMDYIRQIE 356          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RRP3_ASPCL (ATP-dependent rRNA helicase rrp3 OS=Aspergillus clavatus GN=rrp3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.809e-11
Identity = 29/56 (51.79%), Postives = 43/56 (76.79%), Query Frame = 1
Query:   10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 177
            ++ ILVATD+  RG+DI  V++V+N+D+P  + TY+HRVGR  R G  G+AI+FV+
Sbjct:  343 SRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVT 398          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: ROK1_VANPO (ATP-dependent RNA helicase ROK1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=ROK1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.809e-11
Identity = 36/90 (40.00%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS---SASDSDILNQVQARFEVDIKELPEQIDTST 267
            G+   L+ TD++ RG+D + VN+VINYD+P +A  Y+HR+GR GR G  G A+TF +   S +   I+N V  +   +I E  E++   T
Sbjct:  430 GDLWCLITTDVLARGVDFKGVNLVINYDVPRTAQAYVHRIGRTGRGGRSGKAVTFYTKEDSIAIKPIIN-VMKQSGSEISEWMEKVSKMT 518          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH52C_ORYSJ (DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.809e-11
Identity = 34/91 (37.36%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 279
            G+  ILVATD+  RG+DI  V  V+N+D+P+  D Y+HR+GR GR G  GLA  F +  ++S +   +    +   +E+P  +      PS
Sbjct:  465 GHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE-NNSSMARSLAELMQESNQEVPAWLSRYAARPS 554          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.809e-11
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 171
            G   ILVATD+  RG+DI+ + +VINYD P   + Y+HR+GR GR G  G+A TF
Sbjct:  443 GRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTF 497          
The following BLAST results are available for this feature:
BLAST of CX309046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
Y2004_STAAW3.809e-1146.15Probable DEAD-box ATP-dependent RNA helicase MW200... [more]
Y1985_STAAS3.809e-1146.15Probable DEAD-box ATP-dependent RNA helicase SAS19... [more]
Y1965_STAAB3.809e-1146.15Probable DEAD-box ATP-dependent RNA helicase SAB19... [more]
Y1885_STAAN3.809e-1146.15Probable DEAD-box ATP-dependent RNA helicase SA188... [more]
Y1688_STAEQ3.809e-1146.15Probable DEAD-box ATP-dependent RNA helicase SERP1... [more]
Y1679_STAES3.809e-1146.15Probable DEAD-box ATP-dependent RNA helicase SE_16... [more]
RRP3_ASPCL3.809e-1151.79ATP-dependent rRNA helicase rrp3 OS=Aspergillus cl... [more]
ROK1_VANPO3.809e-1140.00ATP-dependent RNA helicase ROK1 OS=Vanderwaltozyma... [more]
RH52C_ORYSJ3.809e-1137.36DEAD-box ATP-dependent RNA helicase 52C OS=Oryza s... [more]
RH40_ORYSJ3.809e-1152.73DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionC21007G04Rv AbsLeaSub1 Citrus clementina cDNA clone C21007G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309046 ID=CX309046; Name=CX309046; organism=Citrus clementina; type=EST; length=485bp
GCGGGGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGTTGGTAGGGG
AATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACATGCCAGATT
CTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGGTTTGGCACC
AAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTCCGATATTCT
CAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGCTTCCTGAGC
AGATTGATACATCTACATACATGCCATCATAGTGGAGATCTGTTCTCTGA
TGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAGGCCCTTTAT
GTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATATGTTGCCTTG
GAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGCTGCCTTTTC
TTGTTTTTGGGATTTGTAGCCTTTTAATACCTTCT
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