CX309046

Overview
NameCX309046
Unique NameCX309046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: ROK1_YEAS7 (ATP-dependent RNA helicase ROK1 OS=Saccharomyces cerevisiae (strain YJM789) GN=ROK1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:   22 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 171
            L+ TD++ RGID + VN+VINYD+P S+  Y+HR+GR GR G  G AITF
Sbjct:  426 LICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITF 475          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RHLB_PSYIN (ATP-dependent RNA helicase rhlB OS=Psychromonas ingrahamii (strain 37) GN=rhlB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 171
            G   ILVATD+  RG+ I +V+ V N+D+PD  + Y+HR+GR GR G KGLAI+F
Sbjct:  305 GEIDILVATDVAARGLHIPKVSHVFNFDLPDDCEDYVHRIGRTGRAGEKGLAISF 359          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH43_ARATH (Putative DEAD-box ATP-dependent RNA helicase 43 OS=Arabidopsis thaliana GN=RH43 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 177
            G K +LVATD+  +G+D   +  VINYDMP   + Y+HR+GR GR G  G+A TF++
Sbjct:  397 GKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFIN 453          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH40_ARATH (DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 171
            G   +L+ATD+  RG+DI+ + +VINYD P   + Y+HR+GR GR G  G+A TF
Sbjct:  728 GKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTF 782          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH35_ARATH (DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana GN=RH35 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS-SASDSDILN 204
            G K +LVATD+  +G+D   +  VINYDMP   + Y+HR+GR GR G  G+A TF++ + S++ +L+
Sbjct:  446 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLD 512          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH14_ORYSJ (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 33/91 (36.26%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV---SSASDSDILNQVQARFEVDIKELPEQIDTSTY 270
            G   ILVATD+  RG+DI+ + +V+NYD P   + Y+HR+GR GR G  G+A TF     S   SD++  ++   +   ++L + +    Y
Sbjct:  473 GRCPILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILEGANQSVSQQLRDMVSRGGY 563          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: PRP5_ASPTN (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=prp5 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 252
            +L+AT +  RG+D++++ +V+NYD P+  + Y+HR GR GR G  G A+TF         L + Q RF VDI +  +Q
Sbjct:  854 VLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTF---------LTEDQERFSVDIAKALKQ 922          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: PRP28_CANGA (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Candida glabrata GN=PRP28 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 28/76 (36.84%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDI 234
            G   +L+AT++  RG+DI  V +V+N+ M    D Y+HR+GR GR G  G+A+T+++   D  ++ Q+ A++  D+
Sbjct:  480 GTANVLIATNVAARGLDIPDVALVVNFQMSKKFDDYIHRIGRTGRAGKTGIAVTYLTGEEDPQLIKQL-AKYVKDV 554          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DDX52_RAT (Probable ATP-dependent RNA helicase DDX52 OS=Rattus norvegicus GN=Ddx52 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQV 210
            +L+ T L+ RGID + VN+VINYD P S+  Y+HR+GR GR G +G A+TF +   D  +L  V
Sbjct:  466 VLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTE-DDKPLLRSV 528          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DDX52_MOUSE (Probable ATP-dependent RNA helicase DDX52 OS=Mus musculus GN=Ddx52 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQV 210
            +L+ T L+ RGID + VN+VINYD P S+  Y+HR+GR GR G +G A+TF +   D  +L  V
Sbjct:  466 VLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTE-DDKPLLRSV 528          
The following BLAST results are available for this feature:
BLAST of CX309046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
ROK1_YEAS74.974e-1158.00ATP-dependent RNA helicase ROK1 OS=Saccharomyces c... [more]
RHLB_PSYIN4.974e-1154.55ATP-dependent RNA helicase rhlB OS=Psychromonas in... [more]
RH43_ARATH4.974e-1149.12Putative DEAD-box ATP-dependent RNA helicase 43 OS... [more]
RH40_ARATH4.974e-1149.09DEAD-box ATP-dependent RNA helicase 40 OS=Arabidop... [more]
RH35_ARATH4.974e-1144.78DEAD-box ATP-dependent RNA helicase 35 OS=Arabidop... [more]
RH14_ORYSJ4.974e-1136.26DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sa... [more]
PRP5_ASPTN4.974e-1139.74Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
PRP28_CANGA4.974e-1136.84Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DDX52_RAT4.974e-1148.44Probable ATP-dependent RNA helicase DDX52 OS=Rattu... [more]
DDX52_MOUSE4.974e-1148.44Probable ATP-dependent RNA helicase DDX52 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionC21007G04Rv AbsLeaSub1 Citrus clementina cDNA clone C21007G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309046 ID=CX309046; Name=CX309046; organism=Citrus clementina; type=EST; length=485bp
GCGGGGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGTTGGTAGGGG
AATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACATGCCAGATT
CTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGGTTTGGCACC
AAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTCCGATATTCT
CAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGCTTCCTGAGC
AGATTGATACATCTACATACATGCCATCATAGTGGAGATCTGTTCTCTGA
TGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAGGCCCTTTAT
GTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATATGTTGCCTTG
GAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGCTGCCTTTTC
TTGTTTTTGGGATTTGTAGCCTTTTAATACCTTCT
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