CX309046
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: ROK1_YEAS7 (ATP-dependent RNA helicase ROK1 OS=Saccharomyces cerevisiae (strain YJM789) GN=ROK1 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11 Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1 Query: 22 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 171 L+ TD++ RGID + VN+VINYD+P S+ Y+HR+GR GR G G AITF Sbjct: 426 LICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITF 475
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RHLB_PSYIN (ATP-dependent RNA helicase rhlB OS=Psychromonas ingrahamii (strain 37) GN=rhlB PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11 Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 171 G ILVATD+ RG+ I +V+ V N+D+PD + Y+HR+GR GR G KGLAI+F Sbjct: 305 GEIDILVATDVAARGLHIPKVSHVFNFDLPDDCEDYVHRIGRTGRAGEKGLAISF 359
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH43_ARATH (Putative DEAD-box ATP-dependent RNA helicase 43 OS=Arabidopsis thaliana GN=RH43 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11 Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 177 G K +LVATD+ +G+D + VINYDMP + Y+HR+GR GR G G+A TF++ Sbjct: 397 GKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFIN 453
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH40_ARATH (DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11 Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 171 G +L+ATD+ RG+DI+ + +VINYD P + Y+HR+GR GR G G+A TF Sbjct: 728 GKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTF 782
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH35_ARATH (DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana GN=RH35 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11 Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS-SASDSDILN 204 G K +LVATD+ +G+D + VINYDMP + Y+HR+GR GR G G+A TF++ + S++ +L+ Sbjct: 446 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLD 512
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH14_ORYSJ (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11 Identity = 33/91 (36.26%), Postives = 52/91 (57.14%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV---SSASDSDILNQVQARFEVDIKELPEQIDTSTY 270 G ILVATD+ RG+DI+ + +V+NYD P + Y+HR+GR GR G G+A TF S SD++ ++ + ++L + + Y Sbjct: 473 GRCPILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILEGANQSVSQQLRDMVSRGGY 563
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: PRP5_ASPTN (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=prp5 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11 Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 1 Query: 19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 252 +L+AT + RG+D++++ +V+NYD P+ + Y+HR GR GR G G A+TF L + Q RF VDI + +Q Sbjct: 854 VLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTF---------LTEDQERFSVDIAKALKQ 922
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: PRP28_CANGA (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Candida glabrata GN=PRP28 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11 Identity = 28/76 (36.84%), Postives = 49/76 (64.47%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDI 234 G +L+AT++ RG+DI V +V+N+ M D Y+HR+GR GR G G+A+T+++ D ++ Q+ A++ D+ Sbjct: 480 GTANVLIATNVAARGLDIPDVALVVNFQMSKKFDDYIHRIGRTGRAGKTGIAVTYLTGEEDPQLIKQL-AKYVKDV 554
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DDX52_RAT (Probable ATP-dependent RNA helicase DDX52 OS=Rattus norvegicus GN=Ddx52 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11 Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 1 Query: 19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQV 210 +L+ T L+ RGID + VN+VINYD P S+ Y+HR+GR GR G +G A+TF + D +L V Sbjct: 466 VLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTE-DDKPLLRSV 528
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DDX52_MOUSE (Probable ATP-dependent RNA helicase DDX52 OS=Mus musculus GN=Ddx52 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11 Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 1 Query: 19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQV 210 +L+ T L+ RGID + VN+VINYD P S+ Y+HR+GR GR G +G A+TF + D +L V Sbjct: 466 VLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTE-DDKPLLRSV 528 The following BLAST results are available for this feature:
BLAST of CX309046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 482
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Sequences
The
following sequences are available for this feature:
EST sequence >CX309046 ID=CX309046; Name=CX309046; organism=Citrus clementina; type=EST; length=485bpback to top |