CX309046
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: CSHA_BACAH (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis (strain Al Hakam) GN=cshA PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11 Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 204 G+ +LVATD+ RG+DI V V N+D+P ++Y+HR+GR GR G KG+A+ FV+ + N Sbjct: 289 GSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RRP3_EMENI (ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans GN=rrp3 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11 Identity = 34/80 (42.50%), Postives = 53/80 (66.25%), Query Frame = 1 Query: 10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE 249 ++ ILVATD+ RG+DI V++V N+D+P + TY+HRVGR R G G+AI+FV+ D ++ +++ K+LPE Sbjct: 335 SRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQ-YDVEVWLRIEHALS---KKLPE 410
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RRP3_ASPTN (ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rrp3 PE=3 SV=2) HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11 Identity = 27/56 (48.21%), Postives = 41/56 (73.21%), Query Frame = 1 Query: 10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 177 ++ +L+ATD+ RG+DI V+ V+NYD+P + TY+HRVGR R G G+A +FV+ Sbjct: 316 SRNLLIATDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVT 371
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH35A_ORYSJ (DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa subsp. japonica GN=Os02g0150100 PE=2 SV=2) HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11 Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 177 G K +LVATD+ +G+D + VINYDMP + Y+HR+GR GR G G+A TF++ Sbjct: 482 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 538
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH21_ARATH (DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana GN=RH21 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11 Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 Query: 19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 177 +LVATD+VGRGIDI V VINYDMP + Y HR+GR GR G G+A +F++ Sbjct: 629 VLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLT 681
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: PRP5_COCIM (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Coccidioides immitis GN=PRP5 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11 Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 1 Query: 19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 252 +L+AT + RG+D++++ +VINYD P+ + Y+HR GR GR G G A+TF L + Q R+ VDI + +Q Sbjct: 864 VLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTF---------LTEEQERYSVDIAKALKQ 932
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: PRP5_ASPOR (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus oryzae GN=prp5 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11 Identity = 32/86 (37.21%), Postives = 50/86 (58.14%), Query Frame = 1 Query: 19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMP 276 +L+AT + RG+D++++ +V+NYD P+ + Y+HR GR GR G G A+TF L + Q R+ VDI + +Q S P Sbjct: 859 VLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTF---------LTEDQERYSVDIAKALKQSGQSVPEP 935
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DRS1_USTMA (ATP-dependent RNA helicase DRS1 OS=Ustilago maydis GN=DRS1 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11 Identity = 32/59 (54.24%), Postives = 37/59 (62.71%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 183 G L+ATDL RG+DI+ V VINYDMP + YLHRVGR R G G A+T V A Sbjct: 660 GKTDFLLATDLASRGLDIKGVQTVINYDMPGQFEAYLHRVGRTARAGRNGRAVTLVGEA 718
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DRS1_ASHGO (ATP-dependent RNA helicase DRS1 OS=Ashbya gossypii GN=DRS1 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11 Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1 Query: 19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 186 +LV TDL RG+DI ++ +VINYDMP + + YLHRVGR R G +G ++T V ++ Sbjct: 520 VLVCTDLASRGLDIPKIEVVINYDMPKTYEIYLHRVGRTARAGREGKSVTLVGEST 575
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DDX17_DROME (ATP-dependent RNA helicase p62 OS=Drosophila melanogaster GN=Rm62 PE=1 SV=3) HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11 Identity = 33/85 (38.82%), Postives = 52/85 (61.18%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDI-KELPEQID 258 G ILVATD+ RG+D++ + VIN+D P +++ Y+HR+GR GR TKG + F + N QA+ VD+ +E ++I+ Sbjct: 579 GKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKN------NAKQAKALVDVLREANQEIN 657 The following BLAST results are available for this feature:
BLAST of CX309046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 482
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Sequences
The
following sequences are available for this feature:
EST sequence >CX309046 ID=CX309046; Name=CX309046; organism=Citrus clementina; type=EST; length=485bpback to top |