CX309046

Overview
NameCX309046
Unique NameCX309046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: CSHA_BACAH (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis (strain Al Hakam) GN=cshA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 204
            G+  +LVATD+  RG+DI  V  V N+D+P   ++Y+HR+GR GR G KG+A+ FV+      + N
Sbjct:  289 GSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RRP3_EMENI (ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans GN=rrp3 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11
Identity = 34/80 (42.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE 249
            ++ ILVATD+  RG+DI  V++V N+D+P  + TY+HRVGR  R G  G+AI+FV+   D ++  +++       K+LPE
Sbjct:  335 SRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQ-YDVEVWLRIEHALS---KKLPE 410          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RRP3_ASPTN (ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rrp3 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11
Identity = 27/56 (48.21%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 177
            ++ +L+ATD+  RG+DI  V+ V+NYD+P  + TY+HRVGR  R G  G+A +FV+
Sbjct:  316 SRNLLIATDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVT 371          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH35A_ORYSJ (DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa subsp. japonica GN=Os02g0150100 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 177
            G K +LVATD+  +G+D   +  VINYDMP   + Y+HR+GR GR G  G+A TF++
Sbjct:  482 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 538          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH21_ARATH (DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana GN=RH21 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 177
            +LVATD+VGRGIDI  V  VINYDMP   + Y HR+GR GR G  G+A +F++
Sbjct:  629 VLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLT 681          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: PRP5_COCIM (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Coccidioides immitis GN=PRP5 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 252
            +L+AT +  RG+D++++ +VINYD P+  + Y+HR GR GR G  G A+TF         L + Q R+ VDI +  +Q
Sbjct:  864 VLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTF---------LTEEQERYSVDIAKALKQ 932          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: PRP5_ASPOR (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus oryzae GN=prp5 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11
Identity = 32/86 (37.21%), Postives = 50/86 (58.14%), Query Frame = 1
Query:   19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMP 276
            +L+AT +  RG+D++++ +V+NYD P+  + Y+HR GR GR G  G A+TF         L + Q R+ VDI +  +Q   S   P
Sbjct:  859 VLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTF---------LTEDQERYSVDIAKALKQSGQSVPEP 935          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DRS1_USTMA (ATP-dependent RNA helicase DRS1 OS=Ustilago maydis GN=DRS1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11
Identity = 32/59 (54.24%), Postives = 37/59 (62.71%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 183
            G    L+ATDL  RG+DI+ V  VINYDMP   + YLHRVGR  R G  G A+T V  A
Sbjct:  660 GKTDFLLATDLASRGLDIKGVQTVINYDMPGQFEAYLHRVGRTARAGRNGRAVTLVGEA 718          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DRS1_ASHGO (ATP-dependent RNA helicase DRS1 OS=Ashbya gossypii GN=DRS1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   19 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 186
            +LV TDL  RG+DI ++ +VINYDMP + + YLHRVGR  R G +G ++T V  ++
Sbjct:  520 VLVCTDLASRGLDIPKIEVVINYDMPKTYEIYLHRVGRTARAGREGKSVTLVGEST 575          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DDX17_DROME (ATP-dependent RNA helicase p62 OS=Drosophila melanogaster GN=Rm62 PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11
Identity = 33/85 (38.82%), Postives = 52/85 (61.18%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDI-KELPEQID 258
            G   ILVATD+  RG+D++ +  VIN+D P +++ Y+HR+GR GR  TKG +  F +        N  QA+  VD+ +E  ++I+
Sbjct:  579 GKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKN------NAKQAKALVDVLREANQEIN 657          
The following BLAST results are available for this feature:
BLAST of CX309046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
CSHA_BACAH4.974e-1143.94DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
RRP3_EMENI6.496e-1142.50ATP-dependent rRNA helicase rrp3 OS=Emericella nid... [more]
RRP3_ASPTN6.496e-1148.21ATP-dependent rRNA helicase rrp3 OS=Aspergillus te... [more]
RH35A_ORYSJ6.496e-1149.12DEAD-box ATP-dependent RNA helicase 35A OS=Oryza s... [more]
RH21_ARATH6.496e-1158.49DEAD-box ATP-dependent RNA helicase 21 OS=Arabidop... [more]
PRP5_COCIM6.496e-1139.74Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
PRP5_ASPOR6.496e-1137.21Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
DRS1_USTMA6.496e-1154.24ATP-dependent RNA helicase DRS1 OS=Ustilago maydis... [more]
DRS1_ASHGO6.496e-1150.00ATP-dependent RNA helicase DRS1 OS=Ashbya gossypii... [more]
DDX17_DROME6.496e-1138.82ATP-dependent RNA helicase p62 OS=Drosophila melan... [more]

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Properties
Property NameValue
Genbank descriptionC21007G04Rv AbsLeaSub1 Citrus clementina cDNA clone C21007G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309046 ID=CX309046; Name=CX309046; organism=Citrus clementina; type=EST; length=485bp
GCGGGGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGTTGGTAGGGG
AATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACATGCCAGATT
CTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGGTTTGGCACC
AAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTCCGATATTCT
CAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGCTTCCTGAGC
AGATTGATACATCTACATACATGCCATCATAGTGGAGATCTGTTCTCTGA
TGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAGGCCCTTTAT
GTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATATGTTGCCTTG
GAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGCTGCCTTTTC
TTGTTTTTGGGATTTGTAGCCTTTTAATACCTTCT
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